Wall clock time and date at job start Mon Mar 30 2020 01:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00146 * 2 1 4 4 C 1.50700 * 109.47140 * 293.95649 * 3 2 1 5 5 H 1.08004 * 119.99929 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00471 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00216 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 119.99864 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47586 * 89.99587 * 8 6 4 10 10 H 1.48496 * 109.47373 * 210.00208 * 8 6 4 11 11 H 1.48508 * 109.46840 * 329.99878 * 8 6 4 12 12 C 1.46903 * 111.00000 * 123.95374 * 2 1 3 13 13 C 1.53506 * 114.17334 * 56.04402 * 12 2 1 14 14 N 1.47481 * 87.93471 * 139.67202 * 13 12 2 15 15 C 1.47488 * 87.83530 * 332.99146 * 14 13 12 16 16 H 1.09002 * 109.47004 * 296.04497 * 1 2 3 17 17 H 1.08997 * 109.47132 * 56.04704 * 1 2 3 18 18 H 1.09003 * 109.46835 * 176.04935 * 1 2 3 19 19 H 1.08999 * 109.47246 * 53.95216 * 3 2 1 20 20 H 1.09002 * 109.47502 * 173.95082 * 3 2 1 21 21 H 0.97003 * 120.00201 * 179.97438 * 7 6 4 22 22 H 1.09007 * 113.38504 * 282.96589 * 12 2 1 23 23 H 1.09007 * 113.47650 * 24.90984 * 13 12 2 24 24 H 1.08997 * 113.53552 * 254.44705 * 13 12 2 25 25 H 1.00901 * 110.99857 * 84.68111 * 14 13 12 26 26 H 1.08997 * 113.47731 * 141.77388 * 15 14 13 27 27 H 1.09001 * 113.47471 * 272.24480 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5112 -2.0488 6 6 2.0267 3.3494 -1.5285 7 7 1.7142 3.9389 -2.6618 8 14 3.0000 4.2762 -0.2311 9 1 4.4524 4.0637 -0.4559 10 1 2.6918 5.7259 -0.3226 11 1 2.6295 3.7755 1.1171 12 6 1.9955 -0.7660 1.1376 13 6 1.4904 -2.2139 1.2081 14 7 2.8538 -2.6138 1.6035 15 6 3.3518 -1.4340 0.8718 16 1 -0.3633 0.4512 0.9233 17 1 -0.3633 0.5739 -0.8524 18 1 -0.3633 -1.0253 -0.0708 19 1 1.5611 1.9273 0.8309 20 1 3.0798 1.3444 0.1083 21 1 1.9882 4.8553 -2.8235 22 1 1.9409 -0.2278 2.0840 23 1 1.1836 -2.6143 0.2418 24 1 0.7466 -2.3779 1.9877 25 1 2.9883 -2.5059 2.5977 26 1 4.1855 -0.9361 1.3668 27 1 3.5416 -1.6263 -0.1842 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085258108.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:24 Heat of formation + Delta-G solvation = 20.228590 kcal Electronic energy + Delta-G solvation = -10001.791595 eV Core-core repulsion = 8180.968704 eV Total energy + Delta-G solvation = -1820.822891 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.85045 -36.98710 -34.47666 -30.09338 -28.09885 -26.61817 -25.46367 -22.64384 -20.96141 -18.98769 -17.44600 -16.71796 -16.47880 -15.73773 -15.13365 -14.55917 -14.12942 -13.71478 -13.53680 -13.36906 -12.91998 -12.86993 -12.32319 -12.12848 -11.88661 -11.50246 -11.29044 -10.80057 -9.71009 -9.08224 -8.30030 -6.33812 1.33102 1.34284 1.44653 2.32452 3.02874 3.19188 3.27250 3.46008 3.95732 4.38831 4.49950 4.61845 4.69110 4.71398 4.79602 4.87885 4.96247 4.99506 5.18047 5.18896 5.51352 5.95838 6.30295 6.38851 6.64229 6.72711 7.29990 8.86587 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.068580 B = 0.013195 C = 0.011960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.182607 B = 2121.558895 C = 2340.486500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.534 5.534 3 C 0.172 3.828 4 C -0.519 4.519 5 H 0.038 0.962 6 C 0.008 3.992 7 N -0.947 5.947 8 Si 0.948 3.052 9 H -0.264 1.264 10 H -0.281 1.281 11 H -0.253 1.253 12 C -0.006 4.006 13 C 0.035 3.965 14 N -0.649 5.649 15 C 0.028 3.972 16 H 0.019 0.981 17 H 0.048 0.952 18 H 0.081 0.919 19 H -0.015 1.015 20 H 0.027 0.973 21 H 0.267 0.733 22 H 0.066 0.934 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.345 0.655 26 H 0.074 0.926 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.099 -8.221 10.962 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.259 5.259 3 C 0.045 3.955 4 C -0.557 4.557 5 H 0.057 0.943 6 C -0.190 4.190 7 N -0.588 5.588 8 Si 0.771 3.229 9 H -0.189 1.189 10 H -0.206 1.206 11 H -0.177 1.177 12 C -0.116 4.116 13 C -0.095 4.095 14 N -0.276 5.276 15 C -0.103 4.103 16 H 0.037 0.963 17 H 0.067 0.933 18 H 0.100 0.900 19 H 0.003 0.997 20 H 0.045 0.955 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.114 0.886 24 H 0.105 0.895 25 H 0.160 0.840 26 H 0.093 0.907 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.500 -9.042 10.008 13.571 hybrid contribution -0.272 2.152 1.177 2.467 sum 1.228 -6.890 11.185 13.194 Atomic orbital electron populations 1.22169 0.87355 1.01564 0.99713 1.62157 1.08360 1.14777 1.40559 1.19907 0.95091 0.85923 0.94573 1.21276 1.35033 0.97569 1.01835 0.94325 1.25853 0.96990 0.98434 0.97682 1.70045 1.48565 1.13936 1.26255 0.85707 0.79499 0.77692 0.79979 1.18872 1.20623 1.17739 1.24905 0.98323 0.95487 0.92929 1.23558 0.92798 0.90557 1.02636 1.65594 1.08163 1.40493 1.13323 1.23543 0.95834 0.90012 1.00882 0.96293 0.93346 0.90003 0.99726 0.95496 0.92369 0.91676 0.88606 0.89456 0.83968 0.90743 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 9.15 127.69 1.17 2.67 15 2 N -0.53 -21.87 4.74 -900.56 -4.27 -26.14 15 3 C 0.17 8.29 3.78 85.56 0.32 8.62 15 4 C -0.52 -30.26 9.01 25.60 0.23 -30.03 15 5 H 0.04 2.51 7.37 -2.91 -0.02 2.49 15 6 C 0.01 0.46 5.47 84.65 0.46 0.92 15 7 N -0.95 -59.49 13.96 21.44 0.30 -59.19 15 8 Si 0.95 44.08 27.47 68.60 1.88 45.96 15 9 H -0.26 -11.74 7.11 99.48 0.71 -11.03 15 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 11 H -0.25 -11.04 6.54 99.48 0.65 -10.39 15 12 C -0.01 -0.19 3.45 45.37 0.16 -0.04 15 13 C 0.03 0.89 7.20 83.58 0.60 1.49 15 14 N -0.65 -16.23 8.76 -541.94 -4.75 -20.98 15 15 C 0.03 0.82 8.42 83.58 0.70 1.52 15 16 H 0.02 0.66 8.14 -2.39 -0.02 0.64 15 17 H 0.05 2.11 6.76 -2.39 -0.02 2.09 15 18 H 0.08 2.50 7.08 -2.39 -0.02 2.49 15 19 H -0.01 -0.72 7.18 -2.39 -0.02 -0.73 15 20 H 0.03 1.27 7.50 -2.39 -0.02 1.26 15 21 H 0.27 15.60 8.31 -92.71 -0.77 14.83 15 22 H 0.07 1.98 8.13 -2.38 -0.02 1.97 15 23 H 0.10 2.65 7.89 -2.38 -0.02 2.63 15 24 H 0.09 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.35 6.94 8.85 -89.69 -0.79 6.15 15 26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 15 27 H 0.09 2.98 8.14 -2.39 -0.02 2.96 15 Total: -1.00 -65.24 223.80 -2.89 -68.13 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.30 Total: 7.06 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 3.65 Total: -14.85 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -8.72 Total: -106.31 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.96 kcal Total: -65.24 -2.89 -68.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085258108.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.360 kcal (2) G-P(sol) polarization free energy of solvation -65.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds