Wall clock time and date at job start Mon Mar 30 2020 01:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46784 * 2 1 4 4 C 1.36943 * 120.00002 * 264.50350 * 3 2 1 5 5 H 1.07992 * 119.99919 * 146.31234 * 4 3 2 6 6 C 1.38809 * 119.99795 * 326.31859 * 4 3 2 7 7 N 1.31620 * 120.00480 * 337.46539 * 6 4 3 8 8 Si 1.86799 * 119.99845 * 157.47037 * 6 4 3 9 9 H 1.48502 * 109.47082 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47556 * 119.99393 * 8 6 4 11 11 H 1.48505 * 109.46994 * 239.99836 * 8 6 4 12 12 C 1.46496 * 120.00014 * 84.51141 * 3 2 1 13 13 C 1.53517 * 114.16863 * 239.99681 * 12 3 2 14 14 N 1.47481 * 87.93276 * 220.32843 * 13 12 3 15 15 C 1.47477 * 87.83536 * 27.00996 * 14 13 12 16 16 H 1.08990 * 109.47416 * 59.99880 * 1 2 3 17 17 H 1.09002 * 109.46776 * 180.02562 * 1 2 3 18 18 H 1.09005 * 109.46829 * 299.99622 * 1 2 3 19 19 H 1.08996 * 109.47001 * 240.00375 * 2 1 3 20 20 H 1.08994 * 109.47324 * 119.99639 * 2 1 3 21 21 H 0.96996 * 120.00117 * 180.02562 * 7 6 4 22 22 H 1.08993 * 113.38612 * 13.07273 * 12 3 2 23 23 H 1.08999 * 113.47456 * 105.55931 * 13 12 3 24 24 H 1.09009 * 113.52953 * 335.10524 * 13 12 3 25 25 H 1.00902 * 111.00160 * 138.70297 * 14 13 12 26 26 H 1.08996 * 113.47819 * 87.75838 * 15 14 13 27 27 H 1.09001 * 113.47814 * 218.22074 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3536 1.9890 -1.1805 5 1 2.1884 3.0485 -1.3083 6 6 2.9057 1.2430 -2.2128 7 7 3.5116 0.1043 -1.9509 8 14 2.7887 1.8553 -3.9737 9 1 2.0636 3.1510 -4.0001 10 1 4.1549 2.0410 -4.5251 11 1 2.0539 0.8606 -4.7959 12 6 2.1480 2.1123 1.2629 13 6 1.2991 3.3891 1.3401 14 7 2.4396 4.0431 2.0082 15 6 3.3238 3.0986 1.3004 16 1 -0.3634 0.5138 -0.8899 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 0.8901 19 1 1.8933 -0.5138 -0.8900 20 1 1.8934 -0.5137 0.8900 21 1 3.8977 -0.4167 -2.6723 22 1 2.0735 1.4730 2.1425 23 1 0.4212 3.2888 1.9784 24 1 1.0645 3.8154 0.3646 25 1 2.5679 4.9838 1.6666 26 1 3.6303 3.4466 0.3140 27 1 4.1620 2.7521 1.9050 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085259288.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:27 Heat of formation + Delta-G solvation = 51.956760 kcal Electronic energy + Delta-G solvation = -10299.898319 eV Core-core repulsion = 8480.451264 eV Total energy + Delta-G solvation = -1819.447054 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.74911 -34.84915 -31.35619 -29.11732 -25.81507 -24.86962 -23.76717 -20.71744 -18.99272 -16.40766 -15.88937 -14.70764 -14.43830 -13.48243 -13.15737 -12.71881 -12.07764 -11.89435 -11.54787 -11.24090 -10.85560 -10.75088 -10.57352 -10.08522 -9.97269 -9.58575 -9.52483 -8.47147 -8.32482 -6.62392 -5.83096 -3.36835 3.31988 3.41189 3.43233 4.42651 5.02052 5.23703 5.48814 5.73768 5.98273 6.25816 6.26424 6.32217 6.48937 6.58233 6.62677 6.72291 6.81404 6.89318 7.01171 7.27363 7.72396 7.77263 7.91478 8.46350 9.15766 9.80128 10.35950 11.17226 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.043756 B = 0.019224 C = 0.015790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.762259 B = 1456.147015 C = 1772.834273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.136 3.864 3 N -0.570 5.570 4 C -0.256 4.256 5 H 0.060 0.940 6 C 0.010 3.990 7 N -0.885 5.885 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.290 1.290 11 H -0.287 1.287 12 C 0.155 3.845 13 C -0.024 4.024 14 N -0.640 5.640 15 C -0.009 4.009 16 H 0.047 0.953 17 H 0.034 0.966 18 H 0.033 0.967 19 H 0.099 0.901 20 H 0.021 0.979 21 H 0.255 0.745 22 H 0.080 0.920 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.306 0.694 26 H 0.077 0.923 27 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 2.503 2.756 4.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 N -0.288 5.288 4 C -0.386 4.386 5 H 0.078 0.922 6 C -0.190 4.190 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.213 1.213 12 C 0.045 3.955 13 C -0.157 4.157 14 N -0.264 5.264 15 C -0.141 4.141 16 H 0.066 0.934 17 H 0.053 0.947 18 H 0.052 0.948 19 H 0.117 0.883 20 H 0.039 0.961 21 H 0.065 0.935 22 H 0.098 0.902 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.117 0.883 26 H 0.095 0.905 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.894 2.138 3.487 5.011 hybrid contribution -0.036 0.640 -1.932 2.035 sum -2.931 2.778 1.556 4.327 Atomic orbital electron populations 1.22330 1.00790 0.98711 1.00415 1.20991 0.89836 0.86252 1.01861 1.43923 1.72608 1.11365 1.00885 1.18918 1.35431 0.94034 0.90197 0.92221 1.25088 0.96868 0.97852 0.99192 1.70015 1.35890 1.15733 1.31139 0.86336 0.77436 0.78443 0.85219 1.20176 1.21646 1.21340 1.21866 0.92912 0.90720 0.90036 1.24330 0.95562 0.98730 0.97075 1.67194 1.05904 1.04603 1.48663 1.24128 0.97762 0.94639 0.97592 0.93355 0.94688 0.94781 0.88348 0.96058 0.93519 0.90231 0.91878 0.91830 0.88280 0.90474 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 10.23 37.16 0.38 -2.94 15 2 C 0.14 3.24 5.99 -4.04 -0.02 3.21 15 3 N -0.57 -14.06 2.72 -165.35 -0.45 -14.51 15 4 C -0.26 -6.81 7.70 -15.06 -0.12 -6.92 15 5 H 0.06 1.59 6.95 -52.49 -0.36 1.22 15 6 C 0.01 0.27 4.91 -17.43 -0.09 0.19 15 7 N -0.89 -25.10 11.34 55.49 0.63 -24.47 15 8 Si 0.90 21.24 29.61 -169.99 -5.03 16.21 15 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 12 C 0.15 3.36 4.77 -67.71 -0.32 3.03 15 13 C -0.02 -0.46 8.24 -7.55 -0.06 -0.52 15 14 N -0.64 -11.85 8.71 -122.67 -1.07 -12.92 15 15 C -0.01 -0.19 8.07 -7.55 -0.06 -0.26 15 16 H 0.05 1.02 8.14 -51.93 -0.42 0.60 15 17 H 0.03 0.62 8.14 -51.93 -0.42 0.20 15 18 H 0.03 0.65 8.14 -51.93 -0.42 0.22 15 19 H 0.10 2.62 5.34 -51.93 -0.28 2.34 15 20 H 0.02 0.48 8.07 -51.93 -0.42 0.06 15 21 H 0.25 6.95 8.31 -40.82 -0.34 6.61 15 22 H 0.08 1.68 8.05 -51.93 -0.42 1.26 15 23 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 24 H 0.06 1.30 7.18 -51.92 -0.37 0.93 15 25 H 0.31 5.09 8.91 -39.29 -0.35 4.74 15 26 H 0.08 1.72 6.77 -51.93 -0.35 1.37 15 27 H 0.06 1.30 8.14 -51.93 -0.42 0.88 15 LS Contribution 223.90 15.07 3.37 3.37 Total: -1.00 -27.69 223.90 -6.64 -34.33 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -3.80 Total: 2.19 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -0.29 Total: -4.20 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.89 Total: -51.90 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -27.69 -6.64 -34.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085259288.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.290 kcal (2) G-P(sol) polarization free energy of solvation -27.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds