Wall clock time and date at job start Mon Mar 30 2020 01:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46784 * 2 1 4 4 C 1.36943 * 120.00002 * 264.50350 * 3 2 1 5 5 H 1.07992 * 119.99919 * 146.31234 * 4 3 2 6 6 C 1.38809 * 119.99795 * 326.31859 * 4 3 2 7 7 N 1.31620 * 120.00480 * 337.46539 * 6 4 3 8 8 Si 1.86799 * 119.99845 * 157.47037 * 6 4 3 9 9 H 1.48502 * 109.47082 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47556 * 119.99393 * 8 6 4 11 11 H 1.48505 * 109.46994 * 239.99836 * 8 6 4 12 12 C 1.46496 * 120.00014 * 84.51141 * 3 2 1 13 13 C 1.53517 * 114.16863 * 239.99681 * 12 3 2 14 14 N 1.47481 * 87.93276 * 220.32843 * 13 12 3 15 15 C 1.47477 * 87.83536 * 27.00996 * 14 13 12 16 16 H 1.08990 * 109.47416 * 59.99880 * 1 2 3 17 17 H 1.09002 * 109.46776 * 180.02562 * 1 2 3 18 18 H 1.09005 * 109.46829 * 299.99622 * 1 2 3 19 19 H 1.08996 * 109.47001 * 240.00375 * 2 1 3 20 20 H 1.08994 * 109.47324 * 119.99639 * 2 1 3 21 21 H 0.96996 * 120.00117 * 180.02562 * 7 6 4 22 22 H 1.08993 * 113.38612 * 13.07273 * 12 3 2 23 23 H 1.08999 * 113.47456 * 105.55931 * 13 12 3 24 24 H 1.09009 * 113.52953 * 335.10524 * 13 12 3 25 25 H 1.00902 * 111.00160 * 138.70297 * 14 13 12 26 26 H 1.08996 * 113.47819 * 87.75838 * 15 14 13 27 27 H 1.09001 * 113.47814 * 218.22074 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3536 1.9890 -1.1805 5 1 2.1884 3.0485 -1.3083 6 6 2.9057 1.2430 -2.2128 7 7 3.5116 0.1043 -1.9509 8 14 2.7887 1.8553 -3.9737 9 1 2.0636 3.1510 -4.0001 10 1 4.1549 2.0410 -4.5251 11 1 2.0539 0.8606 -4.7959 12 6 2.1480 2.1123 1.2629 13 6 1.2991 3.3891 1.3401 14 7 2.4396 4.0431 2.0082 15 6 3.3238 3.0986 1.3004 16 1 -0.3634 0.5138 -0.8899 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 0.8901 19 1 1.8933 -0.5138 -0.8900 20 1 1.8934 -0.5137 0.8900 21 1 3.8977 -0.4167 -2.6723 22 1 2.0735 1.4730 2.1425 23 1 0.4212 3.2888 1.9784 24 1 1.0645 3.8154 0.3646 25 1 2.5679 4.9838 1.6666 26 1 3.6303 3.4466 0.3140 27 1 4.1620 2.7521 1.9050 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085259288.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:27 Heat of formation + Delta-G solvation = 32.266819 kcal Electronic energy + Delta-G solvation = -10300.752139 eV Core-core repulsion = 8480.451264 eV Total energy + Delta-G solvation = -1820.300874 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.41437 -36.70245 -33.32860 -30.89454 -27.63365 -26.49402 -25.60290 -22.55104 -20.76037 -18.20265 -17.76563 -16.40258 -16.35744 -15.29857 -14.86693 -14.41733 -13.85821 -13.63081 -13.22353 -13.11963 -12.72871 -12.49222 -12.38995 -11.97690 -11.69094 -11.40236 -11.30496 -10.46519 -9.90958 -8.59055 -7.84268 -5.41670 1.43828 1.48048 1.56824 2.48783 3.21128 3.37550 3.76687 4.05414 4.30383 4.57578 4.60491 4.63727 4.90926 4.94116 4.98199 5.05439 5.16877 5.19352 5.32911 5.51888 5.65719 5.86061 6.41549 6.44738 7.15722 7.86797 8.37338 9.13121 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.043756 B = 0.019224 C = 0.015790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.762259 B = 1456.147015 C = 1772.834273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.133 3.867 3 N -0.584 5.584 4 C -0.255 4.255 5 H 0.057 0.943 6 C -0.039 4.039 7 N -0.917 5.917 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.292 1.292 11 H -0.289 1.289 12 C 0.140 3.860 13 C -0.010 4.010 14 N -0.626 5.626 15 C -0.005 4.005 16 H 0.034 0.966 17 H 0.058 0.942 18 H 0.047 0.953 19 H 0.068 0.932 20 H 0.024 0.976 21 H 0.252 0.748 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.053 0.947 25 H 0.322 0.678 26 H 0.057 0.943 27 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 3.265 3.228 5.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.007 3.993 3 N -0.304 5.304 4 C -0.385 4.385 5 H 0.074 0.926 6 C -0.236 4.236 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.194 1.194 10 H -0.219 1.219 11 H -0.215 1.215 12 C 0.031 3.969 13 C -0.143 4.143 14 N -0.251 5.251 15 C -0.137 4.137 16 H 0.053 0.947 17 H 0.076 0.924 18 H 0.066 0.934 19 H 0.086 0.914 20 H 0.042 0.958 21 H 0.061 0.939 22 H 0.105 0.895 23 H 0.100 0.900 24 H 0.071 0.929 25 H 0.134 0.866 26 H 0.076 0.924 27 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.733 2.927 3.978 6.191 hybrid contribution 0.226 0.418 -1.992 2.048 sum -3.507 3.346 1.986 5.238 Atomic orbital electron populations 1.22133 0.98033 1.00267 1.00329 1.20959 0.92018 0.85796 1.00516 1.44108 1.73094 1.11730 1.01431 1.19072 1.34330 0.93951 0.91131 0.92558 1.25739 0.97176 0.98297 1.02358 1.70133 1.37273 1.16947 1.31786 0.85413 0.77036 0.78051 0.81150 1.19389 1.21912 1.21529 1.22113 0.94271 0.91410 0.89108 1.24133 0.96093 0.97040 0.97029 1.67162 1.04738 1.05197 1.47961 1.23979 0.97885 0.94973 0.96895 0.94701 0.92352 0.93424 0.91368 0.95775 0.93893 0.89496 0.90043 0.92905 0.86630 0.92435 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.77 10.23 71.98 0.74 -5.03 15 2 C 0.13 6.23 5.99 86.38 0.52 6.74 15 3 N -0.58 -28.47 2.72 -677.05 -1.84 -30.31 15 4 C -0.25 -13.44 7.70 84.03 0.65 -12.80 15 5 H 0.06 2.97 6.95 -2.91 -0.02 2.95 15 6 C -0.04 -2.10 4.91 84.86 0.42 -1.68 15 7 N -0.92 -52.61 11.34 21.65 0.25 -52.36 15 8 Si 0.96 43.77 29.61 68.60 2.03 45.80 15 9 H -0.27 -11.87 7.11 99.48 0.71 -11.17 15 10 H -0.29 -13.40 7.11 99.48 0.71 -12.70 15 11 H -0.29 -13.20 7.11 99.48 0.71 -12.50 15 12 C 0.14 5.86 4.77 45.45 0.22 6.07 15 13 C -0.01 -0.36 8.24 83.57 0.69 0.33 15 14 N -0.63 -21.60 8.71 -542.01 -4.72 -26.33 15 15 C -0.01 -0.21 8.07 83.57 0.67 0.46 15 16 H 0.03 1.42 8.14 -2.39 -0.02 1.40 15 17 H 0.06 1.97 8.14 -2.39 -0.02 1.95 15 18 H 0.05 1.70 8.14 -2.38 -0.02 1.68 15 19 H 0.07 3.67 5.34 -2.39 -0.01 3.65 15 20 H 0.02 1.08 8.07 -2.39 -0.02 1.06 15 21 H 0.25 13.95 8.31 -92.71 -0.77 13.18 15 22 H 0.09 3.50 8.05 -2.39 -0.02 3.48 15 23 H 0.08 2.71 8.14 -2.39 -0.02 2.69 15 24 H 0.05 2.06 7.18 -2.38 -0.02 2.05 15 25 H 0.32 9.84 8.91 -89.69 -0.80 9.04 15 26 H 0.06 2.53 6.77 -2.39 -0.02 2.51 15 27 H 0.07 2.66 8.14 -2.39 -0.02 2.64 15 Total: -1.00 -57.15 223.90 -0.04 -57.19 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.35 Total: 11.91 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 3.90 Total: -5.90 kcal Atomic # 7 Polarization: -102.68 SS G_CDS: -6.32 Total: -109.00 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -57.15 -0.04 -57.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085259288.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.453 kcal (2) G-P(sol) polarization free energy of solvation -57.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds