Wall clock time and date at job start Mon Mar 30 2020 02:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 109.52150 * 59.59294 * 9 7 2 11 11 C 1.53123 * 109.52073 * 299.40303 * 9 7 2 12 12 C 1.53031 * 109.27586 * 182.44289 * 11 9 7 13 13 N 1.46848 * 109.52746 * 59.17723 * 12 11 9 14 14 C 1.46842 * 111.19688 * 298.25933 * 13 12 11 15 15 C 1.53036 * 109.52476 * 61.74111 * 14 13 12 16 16 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 17 17 H 0.96696 * 114.00246 * 299.99788 * 10 9 7 18 18 H 1.08999 * 109.50425 * 302.38534 * 11 9 7 19 19 H 1.08997 * 109.50292 * 62.50214 * 11 9 7 20 20 H 1.09006 * 109.46173 * 299.16238 * 12 11 9 21 21 H 1.09007 * 109.45509 * 179.19172 * 12 11 9 22 22 H 1.00899 * 110.99606 * 62.35113 * 13 12 11 23 23 H 1.08998 * 109.46258 * 301.72129 * 14 13 12 24 24 H 1.09000 * 109.45584 * 181.75024 * 14 13 12 25 25 H 1.09004 * 109.50673 * 180.87972 * 15 14 13 26 26 H 1.08998 * 109.50487 * 60.75669 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4268 -2.5695 -1.1706 11 6 0.3761 -2.5905 1.2480 12 6 -0.3396 -3.9431 1.2671 13 7 0.6541 -5.0243 1.2621 14 6 1.4749 -4.9854 0.0451 15 6 2.2448 -3.6640 -0.0105 16 1 -0.4850 0.8401 -0.0004 17 1 -0.2291 -1.8616 -1.2318 18 1 1.0014 -2.4971 2.1359 19 1 -0.3619 -1.7885 1.2359 20 1 -0.9754 -4.0300 0.3859 21 1 -0.9522 -4.0170 2.1657 22 1 1.2313 -4.9886 2.0889 23 1 0.8307 -5.0675 -0.8303 24 1 2.1802 -5.8164 0.0562 25 1 2.8420 -3.6287 -0.9217 26 1 2.8996 -3.5874 0.8576 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085877884.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:03 Heat of formation + Delta-G solvation = -84.345203 kcal Electronic energy + Delta-G solvation = -10620.252016 eV Core-core repulsion = 8697.175803 eV Total energy + Delta-G solvation = -1923.076213 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.97914 -36.25840 -34.14645 -31.70067 -31.08526 -27.31846 -23.68146 -23.43965 -20.81110 -18.95607 -17.15061 -17.01014 -15.82876 -15.42178 -14.98988 -14.79023 -14.04676 -13.66683 -13.54290 -13.01879 -12.83476 -12.49155 -12.29809 -12.05603 -11.84604 -11.63682 -11.01993 -10.59041 -10.12481 -9.20344 -8.16247 -6.38986 1.36498 1.38689 1.47739 2.35857 3.00934 3.54289 4.07925 4.20409 4.40731 4.49265 4.61679 4.72971 4.91756 5.03092 5.06769 5.26623 5.32711 5.53365 5.71744 5.92602 6.17331 6.22180 6.60368 6.68299 7.32785 7.47646 8.80705 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.077178 B = 0.016475 C = 0.015564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.708579 B = 1699.163462 C = 1798.646399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.028 3.972 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.278 1.278 6 H -0.273 1.273 7 C -0.566 4.566 8 H 0.047 0.953 9 C 0.236 3.764 10 O -0.597 6.597 11 C -0.161 4.161 12 C 0.066 3.934 13 N -0.680 5.680 14 C 0.068 3.932 15 C -0.132 4.132 16 H 0.269 0.731 17 H 0.372 0.628 18 H 0.037 0.963 19 H 0.068 0.932 20 H 0.054 0.946 21 H 0.076 0.924 22 H 0.341 0.659 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.048 0.952 26 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.255 -4.216 2.433 5.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.172 4.172 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.605 4.605 8 H 0.066 0.934 9 C 0.196 3.804 10 O -0.405 6.405 11 C -0.201 4.201 12 C -0.063 4.063 13 N -0.309 5.309 14 C -0.062 4.062 15 C -0.171 4.171 16 H 0.078 0.922 17 H 0.221 0.779 18 H 0.056 0.944 19 H 0.087 0.913 20 H 0.073 0.927 21 H 0.094 0.906 22 H 0.158 0.842 23 H 0.076 0.924 24 H 0.107 0.893 25 H 0.067 0.933 26 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.026 -5.121 2.073 5.619 hybrid contribution 0.646 2.525 0.181 2.613 sum 1.671 -2.596 2.254 3.823 Atomic orbital electron populations 1.69691 1.06701 1.27954 1.50863 1.25693 0.95870 1.02213 0.93425 0.85575 0.78696 0.79258 0.78160 1.20331 1.20345 1.19751 1.22111 0.93444 0.93077 1.51821 0.93443 1.18829 0.87286 0.91840 0.82399 1.86083 1.52671 1.54682 1.47073 1.22648 1.00504 0.98548 0.98440 1.21901 0.94626 0.88617 1.01202 1.60808 1.18855 1.46225 1.04967 1.21904 0.95622 0.95508 0.93181 1.22134 0.97943 0.96210 1.00832 0.92178 0.77930 0.94413 0.91302 0.92692 0.90571 0.84161 0.92421 0.89263 0.93288 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.28 9.73 21.45 0.21 -49.07 15 2 C 0.03 1.49 5.22 84.66 0.44 1.93 15 3 Si 0.96 42.82 29.54 68.60 2.03 44.85 15 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 15 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 15 7 C -0.57 -31.17 8.25 25.60 0.21 -30.96 15 8 H 0.05 2.62 7.74 -2.91 -0.02 2.60 15 9 C 0.24 11.79 0.67 -11.46 -0.01 11.79 15 10 O -0.60 -31.60 11.83 -148.98 -1.76 -33.37 15 11 C -0.16 -7.49 4.81 30.65 0.15 -7.35 15 12 C 0.07 2.58 6.42 86.32 0.55 3.14 15 13 N -0.68 -23.75 6.87 -514.01 -3.53 -27.28 15 14 C 0.07 2.46 6.42 86.33 0.55 3.01 15 15 C -0.13 -5.63 5.03 30.65 0.15 -5.48 15 16 H 0.27 13.81 8.31 -92.70 -0.77 13.04 15 17 H 0.37 20.36 7.13 -74.06 -0.53 19.83 15 18 H 0.04 1.73 8.14 -2.39 -0.02 1.71 15 19 H 0.07 3.55 6.18 -2.39 -0.01 3.54 15 20 H 0.05 2.30 7.76 -2.38 -0.02 2.29 15 21 H 0.08 2.62 8.14 -2.38 -0.02 2.60 15 22 H 0.34 10.69 8.86 -89.69 -0.79 9.90 15 23 H 0.06 2.30 7.76 -2.39 -0.02 2.28 15 24 H 0.09 2.68 8.14 -2.39 -0.02 2.66 15 25 H 0.05 2.13 8.14 -2.38 -0.02 2.11 15 26 H 0.06 2.58 8.14 -2.39 -0.02 2.56 15 Total: -1.00 -56.78 210.57 -1.15 -57.92 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.14 Total: 30.86 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 2.06 Total: -23.91 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -3.32 Total: -76.35 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -1.76 Total: -33.37 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -56.78 -1.15 -57.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877884.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.421 kcal (2) G-P(sol) polarization free energy of solvation -56.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds