Wall clock time and date at job start Mon Mar 30 2020 02:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48565 * 110.99666 * 2 1 4 4 C 1.54383 * 104.59247 * 200.95673 * 3 2 1 5 5 C 1.54262 * 105.05929 * 23.85421 * 4 3 2 6 6 O 1.42900 * 110.32277 * 240.99575 * 5 4 3 7 7 C 1.50698 * 110.32018 * 118.89374 * 5 4 3 8 8 H 1.08010 * 120.00010 * 241.85672 * 7 5 4 9 9 C 1.37883 * 120.00294 * 61.86504 * 7 5 4 10 10 N 1.31512 * 119.99991 * 173.53008 * 9 7 5 11 11 Si 1.86797 * 119.99619 * 353.53397 * 9 7 5 12 12 H 1.48503 * 109.47038 * 275.11250 * 11 9 7 13 13 H 1.48502 * 109.47412 * 35.11409 * 11 9 7 14 14 H 1.48503 * 109.46977 * 155.11760 * 11 9 7 15 15 C 1.48560 * 111.00262 * 244.58071 * 2 1 3 16 16 H 1.09001 * 109.47109 * 60.12688 * 1 2 3 17 17 H 1.08999 * 109.46659 * 180.13037 * 1 2 3 18 18 H 1.09007 * 109.47193 * 300.12616 * 1 2 3 19 19 H 1.09005 * 110.40966 * 82.18310 * 3 2 1 20 20 H 1.08996 * 110.51363 * 319.79001 * 3 2 1 21 21 H 1.09000 * 110.32752 * 264.95777 * 4 3 2 22 22 H 1.08999 * 110.32357 * 142.74864 * 4 3 2 23 23 H 0.96699 * 113.99501 * 178.57144 * 6 5 4 24 24 H 0.96999 * 119.99662 * 179.97438 * 10 9 7 25 25 H 1.09003 * 110.40834 * 40.25956 * 15 2 1 26 26 H 1.08992 * 110.41153 * 277.81551 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4433 1.2502 -0.5344 5 6 3.4433 -0.0539 -1.3584 6 8 4.3694 -0.9908 -0.8048 7 6 3.7895 0.2357 -2.7962 8 1 3.0763 0.0183 -3.5778 9 6 5.0167 0.7780 -3.1142 10 7 5.3696 0.9127 -4.3739 11 14 6.1779 1.3213 -1.7556 12 1 5.8335 2.7026 -1.3331 13 1 6.0480 0.4022 -0.5964 14 1 7.5753 1.2910 -2.2573 15 6 2.0015 -0.5953 -1.2526 16 1 -0.3633 0.5119 -0.8911 17 1 -0.3632 -1.0277 0.0023 18 1 -0.3634 0.5158 0.8889 19 1 2.0078 1.7917 1.0121 20 1 1.4104 2.0229 -0.6590 21 1 4.1483 1.1749 0.2935 22 1 3.6937 2.0996 -1.1699 23 1 4.3964 -1.8384 -1.2694 24 1 6.2327 1.2946 -4.5975 25 1 1.4099 -0.2713 -2.1089 26 1 2.0080 -1.6830 -1.1837 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085877892.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:44 Heat of formation + Delta-G solvation = -37.377533 kcal Electronic energy + Delta-G solvation = -10522.768177 eV Core-core repulsion = 8601.728635 eV Total energy + Delta-G solvation = -1921.039542 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.50066 -34.90061 -32.34471 -30.55863 -27.94385 -25.94189 -23.45269 -20.77679 -19.50582 -17.02806 -15.38706 -15.17384 -14.78292 -13.78924 -13.71753 -12.78707 -12.63122 -12.35737 -11.58107 -11.38875 -11.26967 -10.90296 -10.84324 -10.36766 -9.98774 -9.95464 -8.92527 -8.65856 -8.28444 -7.94896 -6.16108 -4.26085 3.36365 3.46927 3.69845 4.50023 4.64139 5.15067 5.37096 5.48903 5.62227 5.75061 5.91956 6.06622 6.09491 6.23750 6.34833 6.55034 6.68019 6.87519 7.21654 7.31238 7.54894 7.69762 8.26902 8.81336 9.07721 9.49422 10.94377 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.067075 B = 0.018280 C = 0.017205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.340899 B = 1531.358522 C = 1627.053072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.518 5.518 3 C 0.038 3.962 4 C -0.122 4.122 5 C 0.221 3.779 6 O -0.572 6.572 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.086 3.914 10 N -0.891 5.891 11 Si 0.875 3.125 12 H -0.284 1.284 13 H -0.226 1.226 14 H -0.300 1.300 15 C 0.021 3.979 16 H 0.024 0.976 17 H 0.062 0.938 18 H 0.060 0.940 19 H 0.069 0.931 20 H 0.040 0.960 21 H 0.063 0.937 22 H 0.077 0.923 23 H 0.360 0.640 24 H 0.266 0.734 25 H 0.047 0.953 26 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.540 -0.424 7.006 8.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.242 5.242 3 C -0.090 4.090 4 C -0.160 4.160 5 C 0.181 3.819 6 O -0.377 6.377 7 C -0.593 4.593 8 H 0.092 0.908 9 C -0.119 4.119 10 N -0.528 5.528 11 Si 0.702 3.298 12 H -0.211 1.211 13 H -0.149 1.149 14 H -0.227 1.227 15 C -0.107 4.107 16 H 0.043 0.957 17 H 0.081 0.919 18 H 0.079 0.921 19 H 0.088 0.912 20 H 0.059 0.941 21 H 0.082 0.918 22 H 0.096 0.904 23 H 0.207 0.793 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.162 -0.183 7.788 9.346 hybrid contribution 0.129 0.433 -0.697 0.831 sum -5.034 0.250 7.091 8.699 Atomic orbital electron populations 1.22479 0.89526 1.01403 1.00072 1.65375 1.06800 1.15483 1.36526 1.23036 0.96213 0.89940 0.99762 1.22618 0.95092 0.99011 0.99265 1.19710 0.84181 0.85905 0.92071 1.86529 1.64092 1.27281 1.59846 1.21412 1.02454 1.44538 0.90846 0.90831 1.24983 0.97606 0.93763 0.95508 1.69955 1.21814 1.43489 1.17497 0.87029 0.78669 0.79524 0.84560 1.21095 1.14891 1.22749 1.23785 0.98325 0.99171 0.89382 0.95730 0.91881 0.92091 0.91211 0.94144 0.91829 0.90442 0.79348 0.92494 0.93498 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.53 60.06 0.57 0.79 15 2 N -0.52 -9.90 5.66 -238.22 -1.35 -11.24 15 3 C 0.04 0.73 6.49 -2.18 -0.01 0.72 15 4 C -0.12 -2.74 4.36 -25.35 -0.11 -2.85 15 5 C 0.22 5.29 0.90 -90.39 -0.08 5.20 15 6 O -0.57 -13.52 10.34 -35.23 -0.36 -13.89 15 7 C -0.56 -15.42 8.65 -34.44 -0.30 -15.72 15 8 H 0.07 2.20 7.82 -52.48 -0.41 1.79 15 9 C 0.09 2.47 5.40 -17.82 -0.10 2.38 15 10 N -0.89 -27.09 13.96 55.43 0.77 -26.32 15 11 Si 0.87 22.16 23.91 -169.99 -4.06 18.10 15 12 H -0.28 -7.02 7.01 56.52 0.40 -6.62 15 13 H -0.23 -5.69 5.39 56.52 0.30 -5.39 15 14 H -0.30 -7.66 7.11 56.52 0.40 -7.26 15 15 C 0.02 0.45 5.76 -2.18 -0.01 0.43 15 16 H 0.02 0.37 7.97 -51.93 -0.41 -0.05 15 17 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 18 H 0.06 0.81 8.14 -51.92 -0.42 0.39 15 19 H 0.07 1.18 8.14 -51.93 -0.42 0.75 15 20 H 0.04 0.74 7.97 -51.93 -0.41 0.32 15 21 H 0.06 1.43 7.14 -51.93 -0.37 1.06 15 22 H 0.08 1.82 6.11 -51.93 -0.32 1.50 15 23 H 0.36 7.43 9.08 45.56 0.41 7.84 15 24 H 0.27 7.61 8.31 -40.82 -0.34 7.27 15 25 H 0.05 1.00 7.46 -51.93 -0.39 0.61 15 26 H 0.07 1.37 8.08 -51.93 -0.42 0.95 15 LS Contribution 208.86 15.07 3.15 3.15 Total: -1.00 -30.89 208.86 -4.72 -35.61 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -2.83 Total: 3.64 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -0.04 Total: -9.05 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.57 Total: -37.56 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.36 Total: -13.89 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.06 Total: 18.10 kcal Total LS contribution 3.15 Total: 3.15 kcal Total: -30.89 -4.72 -35.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877892.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.769 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds