Wall clock time and date at job start Mon Mar 30 2020 02:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47446 * 110.99747 * 2 1 4 4 C 1.54319 * 107.23045 * 123.25938 * 3 2 1 5 5 C 1.55132 * 103.02328 * 22.27917 * 4 3 2 6 6 O 1.42908 * 110.99034 * 82.43812 * 5 4 3 7 7 C 1.50699 * 110.99580 * 206.21494 * 5 4 3 8 8 H 1.08001 * 119.99280 * 0.02562 * 7 5 4 9 9 C 1.37874 * 120.00188 * 179.97438 * 7 5 4 10 10 N 1.31509 * 120.00199 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 119.99652 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47019 * 60.00745 * 11 9 7 13 13 H 1.48504 * 109.46809 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47366 * 300.00412 * 11 9 7 15 15 C 1.47849 * 110.99749 * 120.84100 * 2 1 3 16 16 H 1.08992 * 109.47459 * 59.87354 * 1 2 3 17 17 H 1.09004 * 109.47040 * 179.87505 * 1 2 3 18 18 H 1.09000 * 109.47033 * 299.87457 * 1 2 3 19 19 H 1.08995 * 109.88635 * 242.66068 * 3 2 1 20 20 H 1.08997 * 109.89121 * 3.84917 * 3 2 1 21 21 H 1.09002 * 110.70547 * 140.66931 * 4 3 2 22 22 H 1.09006 * 110.70223 * 263.89720 * 4 3 2 23 23 H 0.96693 * 114.00136 * 179.97438 * 6 5 4 24 24 H 0.97004 * 120.00146 * 179.97438 * 10 9 7 25 25 H 1.08997 * 110.37563 * 332.46522 * 15 2 1 26 26 H 1.09004 * 110.37309 * 94.81181 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9974 1.3766 0.0000 4 6 2.9159 1.5137 1.2325 5 6 3.3047 0.0445 1.5439 6 8 4.3870 -0.3852 0.7154 7 6 3.6441 -0.1268 3.0021 8 1 3.5950 0.7198 3.6709 9 6 4.0162 -1.3643 3.4826 10 7 4.0755 -2.3953 2.6683 11 14 4.4362 -1.5766 5.2904 12 1 3.2594 -1.2094 6.1184 13 1 4.8027 -2.9920 5.5505 14 1 5.5808 -0.6972 5.6393 15 6 1.9988 -0.7076 1.1851 16 1 -0.3634 0.5157 -0.8888 17 1 -0.3633 -1.0277 -0.0022 18 1 -0.3633 0.5119 0.8911 19 1 2.5697 1.5540 -0.9105 20 1 1.1756 2.0892 0.0688 21 1 3.8000 2.1034 0.9905 22 1 2.3744 1.9547 2.0695 23 1 4.6656 -1.2974 0.8740 24 1 4.3377 -3.2659 3.0063 25 1 1.2890 -0.6501 2.0102 26 1 2.2148 -1.7478 0.9409 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085877898.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:45 Heat of formation + Delta-G solvation = -49.130038 kcal Electronic energy + Delta-G solvation = -10488.676015 eV Core-core repulsion = 8567.126846 eV Total energy + Delta-G solvation = -1921.549169 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.15994 -34.49713 -32.04849 -30.22647 -27.61787 -25.66573 -23.75064 -19.98562 -19.42509 -17.05127 -15.15176 -14.92619 -14.31356 -14.01453 -13.06829 -12.75459 -12.43366 -11.90712 -11.48300 -11.14190 -11.06816 -10.86769 -10.52239 -10.31873 -10.15929 -10.04051 -9.24584 -8.57095 -8.06372 -7.44095 -6.21186 -4.29363 3.23864 3.28958 3.31629 4.29804 4.94423 5.07849 5.65795 5.74131 5.88180 6.02071 6.12944 6.29658 6.36913 6.44873 6.73568 6.88626 6.95721 7.43378 7.51245 7.79146 7.83452 7.95581 8.18777 8.73169 9.39864 9.64863 10.85995 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.067688 B = 0.015866 C = 0.015396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.560389 B = 1764.359316 C = 1818.263928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.048 3.952 4 C -0.129 4.129 5 C 0.251 3.749 6 O -0.582 6.582 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.070 3.930 10 N -0.897 5.897 11 Si 0.901 3.099 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.034 3.966 16 H 0.055 0.945 17 H 0.059 0.941 18 H 0.018 0.982 19 H 0.066 0.934 20 H 0.037 0.963 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.383 0.617 24 H 0.269 0.731 25 H 0.036 0.964 26 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.005 2.984 -1.356 5.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.264 5.264 3 C -0.080 4.080 4 C -0.168 4.168 5 C 0.211 3.789 6 O -0.391 6.391 7 C -0.576 4.576 8 H 0.080 0.920 9 C -0.132 4.132 10 N -0.537 5.537 11 Si 0.729 3.271 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.200 1.200 15 C -0.094 4.094 16 H 0.073 0.927 17 H 0.078 0.922 18 H 0.036 0.964 19 H 0.084 0.916 20 H 0.055 0.945 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.234 0.766 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.873 3.132 -2.051 5.386 hybrid contribution -0.154 -0.384 1.971 2.014 sum -4.027 2.748 -0.080 4.876 Atomic orbital electron populations 1.22462 0.89814 1.01030 0.99205 1.63631 1.05974 1.13922 1.42848 1.22726 0.96996 0.89329 0.98962 1.22741 0.98524 0.99159 0.96338 1.19522 0.83348 0.87621 0.88447 1.86066 1.53295 1.35829 1.63953 1.21586 1.46830 0.95232 0.93966 0.92035 1.25047 0.94140 0.95586 0.98457 1.69579 1.47983 1.00753 1.35387 0.86503 0.78980 0.77185 0.84443 1.20182 1.21044 1.20025 1.23738 0.97887 0.99636 0.88115 0.92660 0.92189 0.96368 0.91573 0.94465 0.91654 0.91766 0.76564 0.92069 0.94599 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.12 60.07 0.55 0.97 15 2 N -0.54 -11.69 5.44 -239.51 -1.30 -13.00 15 3 C 0.05 0.97 6.90 -2.83 -0.02 0.95 15 4 C -0.13 -2.90 6.12 -24.91 -0.15 -3.05 15 5 C 0.25 6.53 0.89 -89.64 -0.08 6.45 15 6 O -0.58 -15.98 13.18 -35.23 -0.46 -16.45 15 7 C -0.54 -14.76 8.25 -34.44 -0.28 -15.05 15 8 H 0.06 1.66 7.76 -52.49 -0.41 1.26 15 9 C 0.07 1.88 5.29 -17.82 -0.09 1.78 15 10 N -0.90 -24.41 10.71 55.43 0.59 -23.82 15 11 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 15 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 15 C 0.03 0.83 5.44 -2.29 -0.01 0.81 15 16 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 17 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 18 H 0.02 0.31 8.10 -51.93 -0.42 -0.11 15 19 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 20 H 0.04 0.66 7.58 -51.93 -0.39 0.26 15 21 H 0.06 1.43 8.14 -51.93 -0.42 1.01 15 22 H 0.06 1.37 8.02 -51.93 -0.42 0.96 15 23 H 0.38 10.66 6.93 45.56 0.32 10.97 15 24 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 25 H 0.04 0.89 7.67 -51.93 -0.40 0.49 15 26 H 0.08 2.16 7.74 -51.93 -0.40 1.76 15 LS Contribution 216.89 15.07 3.27 3.27 Total: -1.00 -28.16 216.89 -5.97 -34.13 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -2.95 Total: 7.21 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -0.09 Total: -7.13 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.71 Total: -36.82 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.46 Total: -16.45 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -28.16 -5.97 -34.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877898.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.002 kcal (2) G-P(sol) polarization free energy of solvation -28.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds