Wall clock time and date at job start Mon Mar 30 2020 02:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47446 * 110.99747 * 2 1 4 4 C 1.54319 * 107.23045 * 123.25938 * 3 2 1 5 5 C 1.55132 * 103.02328 * 22.27917 * 4 3 2 6 6 O 1.42908 * 110.99034 * 82.43812 * 5 4 3 7 7 C 1.50699 * 110.99580 * 206.21494 * 5 4 3 8 8 H 1.08001 * 119.99280 * 0.02562 * 7 5 4 9 9 C 1.37874 * 120.00188 * 179.97438 * 7 5 4 10 10 N 1.31509 * 120.00199 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 119.99652 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47019 * 60.00745 * 11 9 7 13 13 H 1.48504 * 109.46809 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47366 * 300.00412 * 11 9 7 15 15 C 1.47849 * 110.99749 * 120.84100 * 2 1 3 16 16 H 1.08992 * 109.47459 * 59.87354 * 1 2 3 17 17 H 1.09004 * 109.47040 * 179.87505 * 1 2 3 18 18 H 1.09000 * 109.47033 * 299.87457 * 1 2 3 19 19 H 1.08995 * 109.88635 * 242.66068 * 3 2 1 20 20 H 1.08997 * 109.89121 * 3.84917 * 3 2 1 21 21 H 1.09002 * 110.70547 * 140.66931 * 4 3 2 22 22 H 1.09006 * 110.70223 * 263.89720 * 4 3 2 23 23 H 0.96693 * 114.00136 * 179.97438 * 6 5 4 24 24 H 0.97004 * 120.00146 * 179.97438 * 10 9 7 25 25 H 1.08997 * 110.37563 * 332.46522 * 15 2 1 26 26 H 1.09004 * 110.37309 * 94.81181 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9974 1.3766 0.0000 4 6 2.9159 1.5137 1.2325 5 6 3.3047 0.0445 1.5439 6 8 4.3870 -0.3852 0.7154 7 6 3.6441 -0.1268 3.0021 8 1 3.5950 0.7198 3.6709 9 6 4.0162 -1.3643 3.4826 10 7 4.0755 -2.3953 2.6683 11 14 4.4362 -1.5766 5.2904 12 1 3.2594 -1.2094 6.1184 13 1 4.8027 -2.9920 5.5505 14 1 5.5808 -0.6972 5.6393 15 6 1.9988 -0.7076 1.1851 16 1 -0.3634 0.5157 -0.8888 17 1 -0.3633 -1.0277 -0.0022 18 1 -0.3633 0.5119 0.8911 19 1 2.5697 1.5540 -0.9105 20 1 1.1756 2.0892 0.0688 21 1 3.8000 2.1034 0.9905 22 1 2.3744 1.9547 2.0695 23 1 4.6656 -1.2974 0.8740 24 1 4.3377 -3.2659 3.0063 25 1 1.2890 -0.6501 2.0102 26 1 2.2148 -1.7478 0.9409 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085877898.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:45 Heat of formation + Delta-G solvation = -70.949753 kcal Electronic energy + Delta-G solvation = -10489.622189 eV Core-core repulsion = 8567.126846 eV Total energy + Delta-G solvation = -1922.495343 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.97441 -36.42579 -34.13393 -31.98358 -29.49685 -27.46847 -25.52188 -21.74830 -21.31341 -19.09963 -17.07884 -16.85343 -16.01996 -15.80911 -14.79267 -14.64505 -14.07146 -13.75900 -13.36943 -12.96300 -12.82602 -12.56444 -12.31622 -12.19924 -12.06866 -11.78597 -11.19203 -10.60520 -10.11355 -9.12644 -8.24290 -6.40917 1.41182 1.42427 1.50636 2.37076 2.99525 3.32219 3.93670 4.05578 4.28928 4.36236 4.60450 4.65740 4.78191 4.89601 4.96130 5.05361 5.17204 5.46660 5.51205 5.79721 5.99339 6.18125 6.36631 6.66240 7.31541 7.49253 8.81512 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.067688 B = 0.015866 C = 0.015396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.560389 B = 1764.359316 C = 1818.263928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.554 5.554 3 C 0.052 3.948 4 C -0.127 4.127 5 C 0.229 3.771 6 O -0.592 6.592 7 C -0.565 4.565 8 H 0.058 0.942 9 C 0.027 3.973 10 N -0.915 5.915 11 Si 0.964 3.036 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.273 1.273 15 C 0.049 3.951 16 H 0.084 0.916 17 H 0.063 0.937 18 H 0.024 0.976 19 H 0.069 0.931 20 H 0.070 0.930 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.376 0.624 24 H 0.272 0.728 25 H 0.026 0.974 26 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.756 3.655 -1.110 6.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.279 5.279 3 C -0.076 4.076 4 C -0.166 4.166 5 C 0.189 3.811 6 O -0.401 6.401 7 C -0.603 4.603 8 H 0.076 0.924 9 C -0.173 4.173 10 N -0.555 5.555 11 Si 0.789 3.211 12 H -0.196 1.196 13 H -0.204 1.204 14 H -0.198 1.198 15 C -0.079 4.079 16 H 0.103 0.897 17 H 0.081 0.919 18 H 0.043 0.957 19 H 0.087 0.913 20 H 0.089 0.911 21 H 0.084 0.916 22 H 0.091 0.909 23 H 0.227 0.773 24 H 0.081 0.919 25 H 0.045 0.955 26 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.637 3.819 -1.818 6.276 hybrid contribution 0.066 -0.587 1.855 1.947 sum -4.571 3.231 0.037 5.598 Atomic orbital electron populations 1.22563 0.87176 1.01950 1.00879 1.63537 1.08563 1.14652 1.41138 1.22746 0.97681 0.89297 0.97876 1.22740 0.99201 0.96850 0.97785 1.19853 0.83352 0.90011 0.87889 1.86053 1.54190 1.35359 1.64459 1.21867 1.47927 0.95584 0.94971 0.92371 1.25794 0.93820 0.95220 1.02500 1.69672 1.47868 1.01019 1.36924 0.85518 0.78744 0.77259 0.79541 1.19589 1.20408 1.19820 1.23367 0.97329 0.98332 0.88886 0.89728 0.91858 0.95727 0.91278 0.91126 0.91606 0.90946 0.77349 0.91871 0.95529 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 9.12 127.69 1.16 1.90 15 2 N -0.55 -23.10 5.44 -911.67 -4.96 -28.06 15 3 C 0.05 1.96 6.90 86.65 0.60 2.56 15 4 C -0.13 -5.56 6.12 31.77 0.19 -5.36 15 5 C 0.23 11.91 0.89 -10.16 -0.01 11.90 15 6 O -0.59 -32.86 13.18 -148.98 -1.96 -34.83 15 7 C -0.57 -31.08 8.25 25.60 0.21 -30.87 15 8 H 0.06 3.14 7.76 -2.91 -0.02 3.12 15 9 C 0.03 1.45 5.29 84.65 0.45 1.90 15 10 N -0.92 -50.15 10.71 21.45 0.23 -49.92 15 11 Si 0.96 42.38 29.54 68.60 2.03 44.40 15 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 13 H -0.28 -11.89 7.11 99.48 0.71 -11.18 15 14 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 15 C 0.05 2.40 5.44 86.77 0.47 2.88 15 16 H 0.08 2.27 8.14 -2.39 -0.02 2.25 15 17 H 0.06 2.00 8.14 -2.38 -0.02 1.98 15 18 H 0.02 0.77 8.10 -2.39 -0.02 0.75 15 19 H 0.07 2.59 8.14 -2.39 -0.02 2.57 15 20 H 0.07 2.22 7.58 -2.39 -0.02 2.20 15 21 H 0.07 2.81 8.14 -2.39 -0.02 2.79 15 22 H 0.07 2.98 8.02 -2.38 -0.02 2.97 15 23 H 0.38 21.44 6.93 -74.06 -0.51 20.93 15 24 H 0.27 14.11 8.31 -92.71 -0.77 13.34 15 25 H 0.03 1.32 7.67 -2.39 -0.02 1.30 15 26 H 0.05 2.88 7.74 -2.39 -0.02 2.86 15 Total: -1.00 -58.69 216.89 -0.95 -59.64 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.64 Total: 23.85 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 3.08 Total: -15.09 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -4.73 Total: -77.98 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.96 Total: -34.83 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -58.69 -0.95 -59.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877898.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.308 kcal (2) G-P(sol) polarization free energy of solvation -58.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds