Wall clock time and date at job start Mon Mar 30 2020 02:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86810 * 119.99816 * 2 1 4 4 H 1.48500 * 109.46609 * 240.00281 * 3 2 1 5 5 H 1.48501 * 109.47028 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47197 * 120.00041 * 3 2 1 7 7 C 1.37875 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99758 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00013 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.53763 * 59.90056 * 9 7 2 11 11 C 1.53123 * 109.50296 * 179.97438 * 9 7 2 12 12 C 1.53120 * 109.21163 * 177.56339 * 11 9 7 13 13 C 1.53048 * 109.27450 * 302.43753 * 12 11 9 14 14 N 1.46848 * 109.57298 * 59.08726 * 13 12 11 15 15 C 1.46842 * 111.19688 * 298.28804 * 14 13 12 16 16 H 0.97004 * 120.00027 * 359.97438 * 1 2 3 17 17 H 0.96695 * 113.99988 * 300.09766 * 10 9 7 18 18 H 1.09002 * 109.52319 * 297.50132 * 11 9 7 19 19 H 1.08995 * 109.52318 * 57.62814 * 11 9 7 20 20 H 1.09000 * 109.50719 * 62.32149 * 12 11 9 21 21 H 1.09003 * 109.50116 * 182.43702 * 12 11 9 22 22 H 1.08999 * 109.41208 * 299.06816 * 13 12 11 23 23 H 1.09000 * 109.46050 * 179.13236 * 13 12 11 24 24 H 1.00910 * 110.99732 * 62.38544 * 14 13 12 25 25 H 1.09001 * 109.46203 * 301.72398 * 15 14 13 26 26 H 1.09004 * 109.46228 * 181.75951 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 8 0.4268 -2.5760 -1.1631 11 6 2.2455 -3.6635 0.0015 12 6 1.4742 -4.9847 0.0641 13 6 0.5912 -4.9955 1.3141 14 7 -0.3427 -3.8632 1.2664 15 6 0.3757 -2.5826 1.2542 16 1 -0.4850 0.8401 0.0004 17 1 -0.2282 -1.8677 -1.2288 18 1 2.8421 -3.6328 -0.9103 19 1 2.9010 -3.5829 0.8685 20 1 0.8488 -5.0835 -0.8231 21 1 2.1785 -5.8155 0.1078 22 1 1.2185 -4.9118 2.2015 23 1 0.0290 -5.9285 1.3536 24 1 -0.9617 -3.9382 0.4730 25 1 1.0040 -2.5101 2.1420 26 1 -0.3430 -1.7630 1.2503 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085877973.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:08 Heat of formation + Delta-G solvation = -85.082207 kcal Electronic energy + Delta-G solvation = -10629.508254 eV Core-core repulsion = 8706.400082 eV Total energy + Delta-G solvation = -1923.108172 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.97865 -36.07941 -34.15497 -32.36354 -30.66647 -26.97028 -24.25873 -23.02126 -20.75880 -18.93502 -17.24057 -16.54752 -16.31385 -15.48217 -15.23807 -14.57067 -13.95223 -13.79915 -13.19970 -12.93558 -12.83928 -12.46626 -12.24069 -12.03789 -11.80313 -11.64142 -11.07751 -10.70679 -10.41733 -8.91436 -8.18879 -6.36837 1.40316 1.41140 1.49101 2.37758 3.01462 3.69961 3.99766 4.19082 4.28580 4.44521 4.68934 4.76519 4.81951 5.02785 5.12026 5.29040 5.32538 5.51410 5.67729 5.89602 6.06831 6.35301 6.60950 6.75578 7.33368 7.45641 8.81561 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.077552 B = 0.016575 C = 0.015640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.961771 B = 1688.919233 C = 1789.882922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.030 3.970 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.272 1.272 7 C -0.567 4.567 8 H 0.048 0.952 9 C 0.207 3.793 10 O -0.596 6.596 11 C -0.099 4.099 12 C -0.144 4.144 13 C 0.057 3.943 14 N -0.690 5.690 15 C 0.049 3.951 16 H 0.270 0.730 17 H 0.373 0.627 18 H 0.040 0.960 19 H 0.061 0.939 20 H 0.051 0.949 21 H 0.079 0.921 22 H 0.066 0.934 23 H 0.089 0.911 24 H 0.335 0.665 25 H 0.042 0.958 26 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.010 -4.949 1.451 5.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.170 4.170 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.606 4.606 8 H 0.066 0.934 9 C 0.166 3.834 10 O -0.404 6.404 11 C -0.137 4.137 12 C -0.183 4.183 13 C -0.072 4.072 14 N -0.317 5.317 15 C -0.081 4.081 16 H 0.080 0.920 17 H 0.222 0.778 18 H 0.059 0.941 19 H 0.080 0.920 20 H 0.070 0.930 21 H 0.097 0.903 22 H 0.084 0.916 23 H 0.108 0.892 24 H 0.152 0.848 25 H 0.060 0.940 26 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.112 -5.362 2.052 5.848 hybrid contribution 0.553 1.642 -0.914 1.959 sum 1.665 -3.720 1.138 4.231 Atomic orbital electron populations 1.69655 1.06647 1.28206 1.50641 1.25684 0.95886 1.02198 0.93241 0.85609 0.78494 0.78927 0.78541 1.20285 1.20317 1.19761 1.22006 0.93502 0.92864 1.52224 0.93382 1.19467 0.88095 0.92296 0.83501 1.86090 1.52720 1.54462 1.47154 1.21476 0.97351 0.94728 1.00159 1.22147 0.99729 0.96956 0.99442 1.22071 0.94232 0.94386 0.96543 1.60876 1.20780 1.02514 1.47579 1.22428 0.97534 0.91141 0.96998 0.92015 0.77811 0.94087 0.92050 0.92989 0.90287 0.91586 0.89225 0.84777 0.93951 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.83 9.71 21.45 0.21 -48.62 15 2 C 0.03 1.60 5.22 84.65 0.44 2.04 15 3 Si 0.96 42.63 29.54 68.60 2.03 44.65 15 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 7 C -0.57 -31.14 8.25 25.60 0.21 -30.93 15 8 H 0.05 2.65 7.74 -2.91 -0.02 2.62 15 9 C 0.21 10.37 0.68 -11.49 -0.01 10.36 15 10 O -0.60 -31.00 11.91 -148.98 -1.77 -32.77 15 11 C -0.10 -4.32 4.95 30.68 0.15 -4.17 15 12 C -0.14 -5.11 5.93 30.65 0.18 -4.93 15 13 C 0.06 1.95 6.55 86.33 0.57 2.52 15 14 N -0.69 -27.87 6.86 -513.99 -3.53 -31.39 15 15 C 0.05 2.34 5.30 86.33 0.46 2.80 15 16 H 0.27 13.81 8.31 -92.71 -0.77 13.04 15 17 H 0.37 20.01 7.14 -74.06 -0.53 19.48 15 18 H 0.04 1.82 8.14 -2.39 -0.02 1.80 15 19 H 0.06 2.57 8.14 -2.39 -0.02 2.55 15 20 H 0.05 1.96 7.80 -2.39 -0.02 1.94 15 21 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 22 H 0.07 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.09 2.52 8.14 -2.39 -0.02 2.50 15 24 H 0.34 13.58 8.38 -89.69 -0.75 12.82 15 25 H 0.04 2.06 8.14 -2.39 -0.02 2.04 15 26 H 0.08 4.18 6.11 -2.38 -0.01 4.16 15 Total: -1.00 -55.86 210.56 -1.17 -57.03 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -0.10 Total: 33.43 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 2.00 Total: -22.32 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -3.32 Total: -80.02 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -1.77 Total: -32.77 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -55.86 -1.17 -57.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877973.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.057 kcal (2) G-P(sol) polarization free energy of solvation -55.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds