Wall clock time and date at job start Mon Mar 30 2020 02:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00235 * 2 1 4 4 H 1.48496 * 109.47371 * 264.79006 * 3 2 1 5 5 H 1.48503 * 109.46987 * 24.79344 * 3 2 1 6 6 H 1.48502 * 109.47184 * 144.78802 * 3 2 1 7 7 C 1.37878 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00255 * 8.34777 * 7 2 1 9 9 C 1.50696 * 119.99793 * 188.35318 * 7 2 1 10 10 O 1.42896 * 109.50584 * 55.31326 * 9 7 2 11 11 C 1.53116 * 109.53691 * 295.21633 * 9 7 2 12 12 C 1.53122 * 109.16643 * 182.38572 * 11 9 7 13 13 C 1.53034 * 109.27640 * 57.65255 * 12 11 9 14 14 N 1.46853 * 109.52698 * 300.82472 * 13 12 11 15 15 C 1.46847 * 111.19854 * 61.74003 * 14 13 12 16 16 H 0.97001 * 120.00116 * 359.97438 * 1 2 3 17 17 H 0.96706 * 113.99975 * 60.08152 * 10 9 7 18 18 H 1.09001 * 109.52379 * 302.28868 * 11 9 7 19 19 H 1.08996 * 109.52393 * 62.47882 * 11 9 7 20 20 H 1.09000 * 109.49937 * 297.71664 * 12 11 9 21 21 H 1.08998 * 109.53633 * 177.60970 * 12 11 9 22 22 H 1.08995 * 109.46637 * 180.80544 * 13 12 11 23 23 H 1.09007 * 109.45789 * 60.83315 * 13 12 11 24 24 H 1.00892 * 111.00459 * 185.84070 * 14 13 12 25 25 H 1.09002 * 109.46378 * 178.24878 * 15 14 13 26 26 H 1.09000 * 109.45944 * 58.27535 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6068 1.9828 -1.3942 5 1 1.3959 2.6819 0.5871 6 1 3.4873 1.4744 0.8073 7 6 2.0044 -1.1941 -0.0005 8 1 1.4730 -2.1244 -0.1367 9 6 3.4994 -1.2011 0.1891 10 8 3.8299 -0.5198 1.4009 11 6 4.1688 -0.4950 -0.9932 12 6 5.6891 -0.5593 -0.8219 13 6 6.1244 -2.0227 -0.7187 14 7 5.4575 -2.6537 0.4275 15 6 3.9983 -2.6461 0.2629 16 1 -0.4850 0.8400 0.0004 17 1 3.4413 -0.9155 2.1931 18 1 3.8857 -0.9911 -1.9216 19 1 3.8494 0.5467 -1.0236 20 1 5.9755 -0.0295 0.0866 21 1 6.1727 -0.0955 -1.6816 22 1 7.2047 -2.0716 -0.5823 23 1 5.8498 -2.5486 -1.6332 24 1 5.8000 -3.5913 0.5739 25 1 3.5344 -3.1475 1.1124 26 1 3.7338 -3.1690 -0.6561 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085877979.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:09 Heat of formation + Delta-G solvation = -45.459472 kcal Electronic energy + Delta-G solvation = -10669.542136 eV Core-core repulsion = 8748.152134 eV Total energy + Delta-G solvation = -1921.390001 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.33015 -34.50066 -32.25781 -31.13315 -29.29763 -24.92799 -23.23861 -21.15706 -18.76929 -17.21576 -16.01036 -14.78386 -14.31620 -14.06621 -13.53091 -12.98472 -12.65936 -12.19132 -12.04899 -11.60194 -11.04207 -10.81795 -10.45839 -10.13063 -9.84235 -9.61476 -8.80720 -8.53878 -8.14439 -7.75122 -6.12345 -4.21240 3.39429 3.51369 3.74566 4.54341 4.78433 5.21645 5.51707 5.53788 5.70424 5.93829 6.02805 6.18054 6.27687 6.37316 6.48798 6.63632 6.83332 7.06437 7.38561 7.51798 7.75071 7.93660 8.31994 8.84873 9.17603 9.54912 10.98645 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.064192 B = 0.020999 C = 0.018313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.089396 B = 1333.061178 C = 1528.581828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.086 3.914 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.306 1.306 6 H -0.221 1.221 7 C -0.559 4.559 8 H 0.072 0.928 9 C 0.229 3.771 10 O -0.565 6.565 11 C -0.107 4.107 12 C -0.118 4.118 13 C 0.065 3.935 14 N -0.685 5.685 15 C 0.048 3.952 16 H 0.265 0.735 17 H 0.357 0.643 18 H 0.062 0.938 19 H 0.055 0.945 20 H 0.072 0.928 21 H 0.050 0.950 22 H 0.062 0.938 23 H 0.020 0.980 24 H 0.327 0.673 25 H 0.068 0.932 26 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.485 -2.448 -0.619 9.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.118 4.118 3 Si 0.711 3.289 4 H -0.217 1.217 5 H -0.235 1.235 6 H -0.144 1.144 7 C -0.597 4.597 8 H 0.090 0.910 9 C 0.189 3.811 10 O -0.370 6.370 11 C -0.145 4.145 12 C -0.156 4.156 13 C -0.065 4.065 14 N -0.315 5.315 15 C -0.081 4.081 16 H 0.074 0.926 17 H 0.203 0.797 18 H 0.081 0.919 19 H 0.073 0.927 20 H 0.091 0.909 21 H 0.068 0.932 22 H 0.080 0.920 23 H 0.039 0.961 24 H 0.143 0.857 25 H 0.086 0.914 26 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 9.674 -1.405 -0.657 9.797 hybrid contribution -0.277 -0.264 -0.540 0.662 sum 9.397 -1.669 -1.197 9.619 Atomic orbital electron populations 1.69966 1.06770 1.27471 1.48697 1.24956 0.94537 0.99849 0.92498 0.87019 0.81953 0.81740 0.78158 1.21739 1.23467 1.14403 1.21428 0.90344 0.95047 1.52887 0.91001 1.18971 0.92926 0.86338 0.82913 1.86530 1.76839 1.57112 1.16518 1.21816 0.93313 1.00662 0.98666 1.21606 0.97268 0.95523 1.01217 1.21827 0.97484 0.95810 0.91343 1.60262 1.06192 1.23185 1.41851 1.22568 0.85991 1.00144 0.99443 0.92584 0.79679 0.91924 0.92714 0.90886 0.93174 0.91987 0.96146 0.85686 0.91401 0.95571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.44 13.96 55.43 0.77 -26.67 15 2 C 0.09 2.50 5.45 -17.82 -0.10 2.40 15 3 Si 0.88 22.69 23.83 -169.99 -4.05 18.64 15 4 H -0.29 -7.35 6.92 56.52 0.39 -6.96 15 5 H -0.31 -7.97 7.11 56.52 0.40 -7.57 15 6 H -0.22 -5.60 5.44 56.52 0.31 -5.29 15 7 C -0.56 -15.66 8.80 -34.44 -0.30 -15.96 15 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 15 9 C 0.23 5.41 0.55 -91.69 -0.05 5.36 15 10 O -0.56 -13.34 9.25 -35.23 -0.33 -13.66 15 11 C -0.11 -2.41 4.50 -26.61 -0.12 -2.53 15 12 C -0.12 -2.23 5.94 -26.65 -0.16 -2.39 15 13 C 0.06 1.08 6.55 -3.83 -0.03 1.06 15 14 N -0.68 -12.09 6.73 -113.81 -0.77 -12.86 15 15 C 0.05 0.97 5.43 -3.83 -0.02 0.95 15 16 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15 17 H 0.36 7.65 9.04 45.56 0.41 8.06 15 18 H 0.06 1.38 8.14 -51.93 -0.42 0.96 15 19 H 0.05 1.32 3.40 -51.93 -0.18 1.14 15 20 H 0.07 1.48 7.80 -51.93 -0.40 1.07 15 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 23 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 15 24 H 0.33 4.81 8.90 -39.30 -0.35 4.46 15 25 H 0.07 1.35 8.14 -51.93 -0.42 0.93 15 26 H 0.03 0.54 8.14 -51.93 -0.42 0.11 15 LS Contribution 204.75 15.07 3.09 3.09 Total: -1.00 -31.03 204.75 -4.77 -35.80 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -2.71 Total: 6.77 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -0.77 Total: -11.11 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.01 Total: -39.53 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.33 Total: -13.66 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.05 Total: 18.64 kcal Total LS contribution 3.09 Total: 3.09 kcal Total: -31.03 -4.77 -35.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877979.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.655 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds