Wall clock time and date at job start Mon Mar 30 2020 02:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00235 * 2 1 4 4 H 1.48496 * 109.47371 * 264.79006 * 3 2 1 5 5 H 1.48503 * 109.46987 * 24.79344 * 3 2 1 6 6 H 1.48502 * 109.47184 * 144.78802 * 3 2 1 7 7 C 1.37878 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00255 * 8.34777 * 7 2 1 9 9 C 1.50696 * 119.99793 * 188.35318 * 7 2 1 10 10 O 1.42896 * 109.50584 * 55.31326 * 9 7 2 11 11 C 1.53116 * 109.53691 * 295.21633 * 9 7 2 12 12 C 1.53122 * 109.16643 * 182.38572 * 11 9 7 13 13 C 1.53034 * 109.27640 * 57.65255 * 12 11 9 14 14 N 1.46853 * 109.52698 * 300.82472 * 13 12 11 15 15 C 1.46847 * 111.19854 * 61.74003 * 14 13 12 16 16 H 0.97001 * 120.00116 * 359.97438 * 1 2 3 17 17 H 0.96706 * 113.99975 * 60.08152 * 10 9 7 18 18 H 1.09001 * 109.52379 * 302.28868 * 11 9 7 19 19 H 1.08996 * 109.52393 * 62.47882 * 11 9 7 20 20 H 1.09000 * 109.49937 * 297.71664 * 12 11 9 21 21 H 1.08998 * 109.53633 * 177.60970 * 12 11 9 22 22 H 1.08995 * 109.46637 * 180.80544 * 13 12 11 23 23 H 1.09007 * 109.45789 * 60.83315 * 13 12 11 24 24 H 1.00892 * 111.00459 * 185.84070 * 14 13 12 25 25 H 1.09002 * 109.46378 * 178.24878 * 15 14 13 26 26 H 1.09000 * 109.45944 * 58.27535 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6068 1.9828 -1.3942 5 1 1.3959 2.6819 0.5871 6 1 3.4873 1.4744 0.8073 7 6 2.0044 -1.1941 -0.0005 8 1 1.4730 -2.1244 -0.1367 9 6 3.4994 -1.2011 0.1891 10 8 3.8299 -0.5198 1.4009 11 6 4.1688 -0.4950 -0.9932 12 6 5.6891 -0.5593 -0.8219 13 6 6.1244 -2.0227 -0.7187 14 7 5.4575 -2.6537 0.4275 15 6 3.9983 -2.6461 0.2629 16 1 -0.4850 0.8400 0.0004 17 1 3.4413 -0.9155 2.1931 18 1 3.8857 -0.9911 -1.9216 19 1 3.8494 0.5467 -1.0236 20 1 5.9755 -0.0295 0.0866 21 1 6.1727 -0.0955 -1.6816 22 1 7.2047 -2.0716 -0.5823 23 1 5.8498 -2.5486 -1.6332 24 1 5.8000 -3.5913 0.5739 25 1 3.5344 -3.1475 1.1124 26 1 3.7338 -3.1690 -0.6561 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085877979.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:09 Heat of formation + Delta-G solvation = -71.858276 kcal Electronic energy + Delta-G solvation = -10670.686874 eV Core-core repulsion = 8748.152134 eV Total energy + Delta-G solvation = -1922.534739 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.00667 -36.20128 -34.43273 -32.72859 -31.06681 -26.91276 -24.83245 -22.83453 -20.45508 -19.28834 -17.63746 -16.71521 -16.17956 -15.65960 -15.24899 -14.80449 -14.41839 -13.92878 -13.64886 -13.49911 -12.82685 -12.59076 -12.42309 -11.86300 -11.61939 -11.36108 -10.89606 -10.56311 -10.00991 -9.21734 -8.37934 -6.48874 1.33857 1.42829 1.68385 2.39972 3.00617 3.39620 3.85234 4.09129 4.22424 4.28095 4.50759 4.64327 4.75780 4.80029 5.03763 5.05249 5.17570 5.40376 5.55162 5.69668 6.06624 6.15874 6.61856 6.67493 7.22704 7.41210 8.76823 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.064192 B = 0.020999 C = 0.018313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.089396 B = 1333.061178 C = 1528.581828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.035 3.965 3 Si 0.944 3.056 4 H -0.284 1.284 5 H -0.312 1.312 6 H -0.212 1.212 7 C -0.559 4.559 8 H 0.036 0.964 9 C 0.225 3.775 10 O -0.568 6.568 11 C -0.114 4.114 12 C -0.114 4.114 13 C 0.063 3.937 14 N -0.686 5.686 15 C 0.057 3.943 16 H 0.266 0.734 17 H 0.366 0.634 18 H 0.061 0.939 19 H 0.038 0.962 20 H 0.060 0.940 21 H 0.078 0.922 22 H 0.095 0.905 23 H 0.029 0.971 24 H 0.348 0.652 25 H 0.067 0.933 26 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.902 -2.411 -0.756 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.165 4.165 3 Si 0.772 3.228 4 H -0.211 1.211 5 H -0.241 1.241 6 H -0.135 1.135 7 C -0.597 4.597 8 H 0.054 0.946 9 C 0.185 3.815 10 O -0.375 6.375 11 C -0.152 4.152 12 C -0.152 4.152 13 C -0.066 4.066 14 N -0.318 5.318 15 C -0.073 4.073 16 H 0.075 0.925 17 H 0.212 0.788 18 H 0.079 0.921 19 H 0.056 0.944 20 H 0.079 0.921 21 H 0.097 0.903 22 H 0.114 0.886 23 H 0.047 0.953 24 H 0.166 0.834 25 H 0.085 0.915 26 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 12.117 -1.394 -0.791 12.223 hybrid contribution -1.050 -0.362 -0.491 1.214 sum 11.068 -1.756 -1.281 11.279 Atomic orbital electron populations 1.70085 1.08390 1.28277 1.50990 1.25725 0.95083 1.03179 0.92528 0.86050 0.80684 0.77705 0.78367 1.21134 1.24103 1.13491 1.21789 0.93065 0.93429 1.51416 0.94563 1.18941 0.90293 0.88827 0.83443 1.86482 1.76638 1.57533 1.16803 1.21819 0.96310 0.99226 0.97822 1.21585 0.94303 0.97385 1.01889 1.21921 0.99202 0.94146 0.91296 1.60165 1.04188 1.24889 1.42529 1.22275 0.88153 0.97601 0.99260 0.92522 0.78752 0.92080 0.94401 0.92096 0.90334 0.88635 0.95272 0.83354 0.91480 0.96094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.99 13.96 21.45 0.30 -58.69 15 2 C 0.03 2.03 5.45 84.66 0.46 2.49 15 3 Si 0.94 47.15 23.83 68.60 1.64 48.78 15 4 H -0.28 -13.78 6.92 99.48 0.69 -13.09 15 5 H -0.31 -15.72 7.11 99.48 0.71 -15.01 15 6 H -0.21 -10.21 5.44 99.48 0.54 -9.67 15 7 C -0.56 -31.63 8.80 25.60 0.23 -31.41 15 8 H 0.04 2.25 7.99 -2.91 -0.02 2.23 15 9 C 0.23 10.38 0.55 -11.49 -0.01 10.38 15 10 O -0.57 -25.83 9.25 -148.98 -1.38 -27.20 15 11 C -0.11 -4.91 4.50 30.67 0.14 -4.77 15 12 C -0.11 -3.88 5.94 30.65 0.18 -3.70 15 13 C 0.06 1.84 6.55 86.32 0.57 2.40 15 14 N -0.69 -21.83 6.73 -513.98 -3.46 -25.29 15 15 C 0.06 2.22 5.43 86.33 0.47 2.69 15 16 H 0.27 15.78 8.31 -92.71 -0.77 15.01 15 17 H 0.37 15.15 9.04 -74.05 -0.67 14.48 15 18 H 0.06 2.59 8.14 -2.39 -0.02 2.57 15 19 H 0.04 1.74 3.40 -2.39 -0.01 1.73 15 20 H 0.06 2.24 7.80 -2.39 -0.02 2.22 15 21 H 0.08 2.23 8.14 -2.39 -0.02 2.21 15 22 H 0.10 2.20 8.14 -2.39 -0.02 2.19 15 23 H 0.03 0.82 8.14 -2.38 -0.02 0.80 15 24 H 0.35 8.89 8.90 -89.70 -0.80 8.09 15 25 H 0.07 2.59 8.14 -2.39 -0.02 2.57 15 26 H 0.02 0.83 8.14 -2.39 -0.02 0.81 15 Total: -1.00 -65.85 204.75 -1.33 -67.19 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -0.47 Total: 17.12 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 2.03 Total: -21.91 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -3.16 Total: -83.98 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -1.38 Total: -27.20 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.64 Total: 48.78 kcal Total: -65.85 -1.33 -67.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877979.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.670 kcal (2) G-P(sol) polarization free energy of solvation -65.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds