Wall clock time and date at job start Mon Mar 30 2020 02:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86799 * 120.00305 * 2 1 4 4 H 1.48506 * 109.46822 * 269.99831 * 3 2 1 5 5 H 1.48499 * 109.47084 * 29.99467 * 3 2 1 6 6 H 1.48500 * 109.47099 * 149.99757 * 3 2 1 7 7 C 1.38644 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00070 * 180.02562 * 7 2 1 9 9 O 1.34932 * 119.99561 * 0.02562 * 7 2 1 10 10 C 1.42900 * 116.99623 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.67223 * 31.78360 * 10 9 7 12 12 C 1.54888 * 110.75789 * 268.54745 * 10 9 7 13 13 C 1.54261 * 104.19672 * 203.56012 * 12 10 9 14 14 C 1.53876 * 106.59990 * 23.60631 * 13 12 10 15 15 H 1.08995 * 110.03160 * 119.28453 * 14 13 12 16 16 N 1.46896 * 110.03476 * 240.71720 * 14 13 12 17 17 C 1.54267 * 106.59870 * 0.02562 * 14 13 12 18 18 H 0.96997 * 119.99587 * 0.02562 * 1 2 3 19 19 H 1.09000 * 110.48622 * 84.87794 * 12 10 9 20 20 H 1.09001 * 110.59737 * 322.29438 * 12 10 9 21 21 H 1.08998 * 110.03492 * 264.32506 * 13 12 10 22 22 H 1.08994 * 110.03470 * 142.89082 * 13 12 10 23 23 H 1.00903 * 110.99798 * 298.54673 * 16 14 13 24 24 H 1.00901 * 110.99798 * 62.49829 * 16 14 13 25 25 H 1.09004 * 110.48597 * 95.06674 * 17 14 13 26 26 H 1.08994 * 110.48679 * 217.71200 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0463 -1.4002 5 1 1.4474 2.6527 0.6999 6 1 3.5474 1.4400 0.7001 7 6 2.0090 -1.2007 0.0005 8 1 3.0890 -1.2008 0.0010 9 8 1.3342 -2.3692 0.0005 10 6 2.1125 -3.5677 0.0005 11 1 3.0491 -3.4183 0.5377 12 6 2.3807 -4.0481 -1.4473 13 6 2.6534 -5.5592 -1.3001 14 6 1.9744 -6.0032 0.0074 15 1 1.2179 -6.7591 -0.2027 16 7 2.9767 -6.5387 0.9383 17 6 1.3122 -4.7464 0.6089 18 1 -0.4849 0.8401 -0.0004 19 1 3.2523 -3.5417 -1.8620 20 1 1.5067 -3.8776 -2.0760 21 1 3.7266 -5.7412 -1.2440 22 1 2.2263 -6.0998 -2.1448 23 1 3.4350 -7.3491 0.5492 24 1 3.6489 -5.8304 1.1926 25 1 0.2643 -4.6892 0.3141 26 1 1.4044 -4.7493 1.6949 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086406785.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:19 Heat of formation + Delta-G solvation = -48.053683 kcal Electronic energy + Delta-G solvation = -10051.979457 eV Core-core repulsion = 8130.476962 eV Total energy + Delta-G solvation = -1921.502495 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.27792 -35.44254 -31.94913 -30.92702 -27.94761 -25.66800 -24.17379 -19.92692 -19.44727 -17.65947 -16.13283 -15.24027 -14.91253 -14.03644 -13.72302 -13.16464 -12.54207 -11.99840 -11.80237 -11.57643 -11.12765 -10.84558 -10.62544 -10.38204 -10.30948 -9.87530 -9.41643 -9.05476 -8.49556 -7.92818 -5.92365 -3.55452 3.32251 3.34832 3.38902 4.32794 4.77501 5.08107 5.10034 5.33382 5.43970 5.76112 5.91138 6.02591 6.03637 6.14842 6.27166 6.49925 6.69189 6.79744 6.88500 6.99532 7.36488 7.49623 7.61139 8.46058 9.51208 10.21587 11.28835 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.090288 B = 0.011172 C = 0.010946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.044633 B = 2505.636098 C = 2557.397928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.021 3.979 3 Si 0.924 3.076 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.359 4.359 8 H 0.061 0.939 9 O -0.282 6.282 10 C 0.094 3.906 11 H 0.042 0.958 12 C -0.145 4.145 13 C -0.155 4.155 14 C 0.088 3.912 15 H 0.078 0.922 16 N -0.844 5.844 17 C -0.114 4.114 18 H 0.258 0.742 19 H 0.056 0.944 20 H 0.071 0.929 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.334 0.666 24 H 0.341 0.659 25 H 0.077 0.923 26 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.732 -8.772 -1.163 10.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.751 3.249 4 H -0.208 1.208 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.438 4.438 8 H 0.079 0.921 9 O -0.197 6.197 10 C 0.034 3.966 11 H 0.060 0.940 12 C -0.183 4.183 13 C -0.195 4.195 14 C -0.024 4.024 15 H 0.097 0.903 16 N -0.372 5.372 17 C -0.152 4.152 18 H 0.067 0.933 19 H 0.075 0.925 20 H 0.089 0.911 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.146 0.854 24 H 0.153 0.847 25 H 0.095 0.905 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.770 -8.787 -0.652 10.020 hybrid contribution 1.459 1.050 -0.921 2.020 sum 6.228 -7.737 -1.573 10.056 Atomic orbital electron populations 1.70021 1.05385 1.25846 1.52024 1.24949 0.95652 0.97707 0.99343 0.85986 0.78688 0.82207 0.78012 1.20775 1.20886 1.20092 1.20861 0.90063 0.82855 1.50038 0.92120 1.85673 1.31396 1.10243 1.92369 1.22747 0.93552 0.87582 0.92713 0.93992 1.22882 1.01590 0.93437 1.00439 1.22952 0.99603 0.97947 0.98960 1.22020 0.94048 0.96592 0.89741 0.90348 1.58987 1.20732 1.11408 1.46110 1.22403 1.00256 0.92184 1.00370 0.93251 0.92544 0.91054 0.92632 0.92209 0.85439 0.84672 0.90465 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.32 13.68 55.48 0.76 -27.56 15 2 C 0.02 0.64 5.49 -17.51 -0.10 0.55 15 3 Si 0.92 22.34 29.55 -169.99 -5.02 17.32 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 15 7 C -0.36 -10.69 9.82 30.88 0.30 -10.38 15 8 H 0.06 1.70 7.69 -52.49 -0.40 1.30 15 9 O -0.28 -8.20 9.57 -16.52 -0.16 -8.36 15 10 C 0.09 2.09 3.39 -24.73 -0.08 2.00 15 11 H 0.04 0.92 7.90 -51.93 -0.41 0.51 15 12 C -0.15 -2.80 6.55 -25.08 -0.16 -2.96 15 13 C -0.15 -2.31 6.57 -25.61 -0.17 -2.48 15 14 C 0.09 1.32 4.04 -66.60 -0.27 1.05 15 15 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 16 N -0.84 -11.19 9.11 -3.72 -0.03 -11.23 15 17 C -0.11 -2.17 6.21 -25.06 -0.16 -2.32 15 18 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 19 H 0.06 1.08 8.14 -51.93 -0.42 0.65 15 20 H 0.07 1.47 8.14 -51.93 -0.42 1.05 15 21 H 0.05 0.75 7.92 -51.93 -0.41 0.34 15 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.33 3.61 9.06 -39.29 -0.36 3.25 15 24 H 0.34 4.50 8.98 -39.29 -0.35 4.14 15 25 H 0.08 1.54 8.14 -51.93 -0.42 1.11 15 26 H 0.07 1.38 8.04 -51.93 -0.42 0.96 15 LS Contribution 223.92 15.07 3.37 3.37 Total: -1.00 -32.60 223.92 -5.32 -37.92 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -3.60 Total: 3.08 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -0.63 Total: -14.55 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.72 Total: -38.79 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.16 Total: -8.36 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -32.60 -5.32 -37.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086406785.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.134 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds