Wall clock time and date at job start Mon Mar 30 2020 02:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86799 * 120.00305 * 2 1 4 4 H 1.48506 * 109.46822 * 269.99831 * 3 2 1 5 5 H 1.48499 * 109.47084 * 29.99467 * 3 2 1 6 6 H 1.48500 * 109.47099 * 149.99757 * 3 2 1 7 7 C 1.38644 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00070 * 180.02562 * 7 2 1 9 9 O 1.34932 * 119.99561 * 0.02562 * 7 2 1 10 10 C 1.42900 * 116.99623 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.67223 * 31.78360 * 10 9 7 12 12 C 1.54888 * 110.75789 * 268.54745 * 10 9 7 13 13 C 1.54261 * 104.19672 * 203.56012 * 12 10 9 14 14 C 1.53876 * 106.59990 * 23.60631 * 13 12 10 15 15 H 1.08995 * 110.03160 * 119.28453 * 14 13 12 16 16 N 1.46896 * 110.03476 * 240.71720 * 14 13 12 17 17 C 1.54267 * 106.59870 * 0.02562 * 14 13 12 18 18 H 0.96997 * 119.99587 * 0.02562 * 1 2 3 19 19 H 1.09000 * 110.48622 * 84.87794 * 12 10 9 20 20 H 1.09001 * 110.59737 * 322.29438 * 12 10 9 21 21 H 1.08998 * 110.03492 * 264.32506 * 13 12 10 22 22 H 1.08994 * 110.03470 * 142.89082 * 13 12 10 23 23 H 1.00903 * 110.99798 * 298.54673 * 16 14 13 24 24 H 1.00901 * 110.99798 * 62.49829 * 16 14 13 25 25 H 1.09004 * 110.48597 * 95.06674 * 17 14 13 26 26 H 1.08994 * 110.48679 * 217.71200 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0463 -1.4002 5 1 1.4474 2.6527 0.6999 6 1 3.5474 1.4400 0.7001 7 6 2.0090 -1.2007 0.0005 8 1 3.0890 -1.2008 0.0010 9 8 1.3342 -2.3692 0.0005 10 6 2.1125 -3.5677 0.0005 11 1 3.0491 -3.4183 0.5377 12 6 2.3807 -4.0481 -1.4473 13 6 2.6534 -5.5592 -1.3001 14 6 1.9744 -6.0032 0.0074 15 1 1.2179 -6.7591 -0.2027 16 7 2.9767 -6.5387 0.9383 17 6 1.3122 -4.7464 0.6089 18 1 -0.4849 0.8401 -0.0004 19 1 3.2523 -3.5417 -1.8620 20 1 1.5067 -3.8776 -2.0760 21 1 3.7266 -5.7412 -1.2440 22 1 2.2263 -6.0998 -2.1448 23 1 3.4350 -7.3491 0.5492 24 1 3.6489 -5.8304 1.1926 25 1 0.2643 -4.6892 0.3141 26 1 1.4044 -4.7493 1.6949 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086406785.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:19 Heat of formation + Delta-G solvation = -72.950408 kcal Electronic energy + Delta-G solvation = -10053.059060 eV Core-core repulsion = 8130.476962 eV Total energy + Delta-G solvation = -1922.582098 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.83932 -37.31773 -33.95320 -32.49384 -29.46819 -27.27011 -26.23094 -21.52567 -20.84468 -19.77489 -17.80234 -16.80228 -16.47364 -15.83704 -15.24307 -14.79262 -14.26091 -13.78524 -13.53409 -13.15751 -12.95130 -12.64432 -12.16658 -12.02768 -11.76923 -11.62231 -11.29032 -11.07174 -10.11908 -9.57946 -8.17959 -5.86809 1.38314 1.45153 1.54320 2.32720 3.14389 3.58236 3.63519 3.72324 3.93846 4.30106 4.40448 4.56695 4.62675 4.75619 4.80207 5.01254 5.08567 5.14767 5.31411 5.36280 5.37706 6.21335 6.25044 6.66463 7.25178 8.09014 9.07377 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.090288 B = 0.011172 C = 0.010946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.044633 B = 2505.636098 C = 2557.397928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.046 4.046 3 Si 1.005 2.995 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.374 4.374 8 H 0.070 0.930 9 O -0.328 6.328 10 C 0.076 3.924 11 H 0.042 0.958 12 C -0.141 4.141 13 C -0.141 4.141 14 C 0.100 3.900 15 H 0.096 0.904 16 N -0.844 5.844 17 C -0.111 4.111 18 H 0.260 0.740 19 H 0.054 0.946 20 H 0.049 0.951 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.353 0.647 24 H 0.342 0.658 25 H 0.060 0.940 26 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.363 -9.481 -1.430 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.238 4.238 3 Si 0.827 3.173 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.452 4.452 8 H 0.088 0.912 9 O -0.243 6.243 10 C 0.018 3.982 11 H 0.060 0.940 12 C -0.180 4.180 13 C -0.180 4.180 14 C -0.012 4.012 15 H 0.114 0.886 16 N -0.374 5.374 17 C -0.149 4.149 18 H 0.069 0.931 19 H 0.073 0.927 20 H 0.068 0.932 21 H 0.096 0.904 22 H 0.100 0.900 23 H 0.167 0.833 24 H 0.155 0.845 25 H 0.078 0.922 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.430 -9.544 -0.923 11.545 hybrid contribution 0.954 1.179 -0.817 1.723 sum 7.384 -8.365 -1.740 11.292 Atomic orbital electron populations 1.70200 1.07617 1.27181 1.53689 1.26242 0.96763 1.02072 0.98730 0.84762 0.77631 0.76256 0.78622 1.19562 1.20348 1.18295 1.21354 0.90653 0.83692 1.49546 0.91226 1.85599 1.33977 1.11860 1.92894 1.23151 0.93601 0.86309 0.95151 0.93988 1.22770 1.00556 0.96911 0.97749 1.22900 1.01239 0.94256 0.99632 1.21862 0.94757 0.94953 0.89580 0.88608 1.58908 1.20818 1.12051 1.45660 1.22375 0.99333 0.93079 1.00125 0.93099 0.92733 0.93175 0.90372 0.90045 0.83294 0.84540 0.92158 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.46 13.68 21.61 0.30 -61.17 15 2 C -0.05 -2.74 5.49 84.83 0.47 -2.28 15 3 Si 1.01 45.94 29.55 68.60 2.03 47.96 15 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 15 7 C -0.37 -22.64 9.82 67.92 0.67 -21.97 15 8 H 0.07 3.93 7.69 -2.91 -0.02 3.91 15 9 O -0.33 -19.65 9.57 -82.01 -0.79 -20.43 15 10 C 0.08 3.44 3.39 31.89 0.11 3.54 15 11 H 0.04 1.85 7.90 -2.38 -0.02 1.83 15 12 C -0.14 -5.38 6.55 31.67 0.21 -5.17 15 13 C -0.14 -3.78 6.57 31.32 0.21 -3.58 15 14 C 0.10 2.78 4.04 45.64 0.18 2.96 15 15 H 0.10 2.40 8.14 -2.39 -0.02 2.38 15 16 N -0.84 -19.85 9.11 -165.68 -1.51 -21.36 15 17 C -0.11 -4.20 6.21 31.68 0.20 -4.00 15 18 H 0.26 15.77 8.31 -92.71 -0.77 15.00 15 19 H 0.05 2.04 8.14 -2.39 -0.02 2.03 15 20 H 0.05 2.09 8.14 -2.39 -0.02 2.07 15 21 H 0.08 1.79 7.92 -2.39 -0.02 1.77 15 22 H 0.08 1.90 8.14 -2.39 -0.02 1.88 15 23 H 0.35 6.25 9.06 -89.69 -0.81 5.43 15 24 H 0.34 8.14 8.98 -89.69 -0.81 7.33 15 25 H 0.06 2.45 8.14 -2.38 -0.02 2.43 15 26 H 0.07 2.55 8.04 -2.39 -0.02 2.53 15 Total: -1.00 -71.53 223.92 1.62 -69.91 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -0.44 Total: 15.59 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 2.04 Total: -30.50 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -1.21 Total: -82.53 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.79 Total: -20.43 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -71.53 1.62 -69.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086406785.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.042 kcal (2) G-P(sol) polarization free energy of solvation -71.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds