Wall clock time and date at job start Mon Mar 30 2020 02:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86798 * 119.99762 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00406 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00399 * 3 2 1 7 7 C 1.38635 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00259 * 180.02562 * 7 2 1 9 9 O 1.34926 * 119.99537 * 359.97438 * 7 2 1 10 10 C 1.42906 * 116.99606 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.67314 * 328.22461 * 10 9 7 12 12 C 1.54891 * 110.75429 * 91.45901 * 10 9 7 13 13 C 1.54264 * 104.19908 * 156.25559 * 12 10 9 14 14 C 1.53883 * 106.59478 * 336.38980 * 13 12 10 15 15 H 1.08997 * 110.02598 * 240.71349 * 14 13 12 16 16 N 1.46902 * 110.02831 * 119.28659 * 14 13 12 17 17 C 1.54261 * 106.59729 * 0.02562 * 14 13 12 18 18 H 0.97001 * 119.99657 * 180.02562 * 1 2 3 19 19 H 1.09004 * 110.48498 * 274.93327 * 12 10 9 20 20 H 1.08996 * 110.48824 * 37.44180 * 12 10 9 21 21 H 1.09005 * 110.02914 * 95.66971 * 13 12 10 22 22 H 1.08992 * 110.03712 * 217.05355 * 13 12 10 23 23 H 1.00894 * 111.00241 * 61.45146 * 16 14 13 24 24 H 1.00900 * 110.99181 * 185.40736 * 16 14 13 25 25 H 1.09007 * 110.48141 * 264.93074 * 17 14 13 26 26 H 1.09005 * 110.48537 * 142.29227 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7098 1.3465 -0.0006 5 1 1.8911 2.3964 1.2126 6 1 1.8910 2.3965 -1.2124 7 6 2.0091 -1.2006 -0.0005 8 1 3.0890 -1.2006 -0.0001 9 8 1.3344 -2.3691 -0.0005 10 6 2.1128 -3.5675 -0.0005 11 1 3.0495 -3.4180 -0.5376 12 6 2.3808 -4.0479 1.4474 13 6 2.6491 -5.5600 1.3009 14 6 1.9675 -6.0026 -0.0059 15 1 1.2090 -6.7562 0.2055 16 7 2.9675 -6.5417 -0.9373 17 6 1.3096 -4.7440 -0.6080 18 1 -0.4850 -0.8401 0.0004 19 1 3.2544 -3.5439 1.8610 20 1 1.5074 -3.8725 2.0754 21 1 3.7218 -5.7451 1.2438 22 1 2.2220 -6.0987 2.1466 23 1 3.4237 -7.3531 -0.5482 24 1 2.5509 -6.7549 -1.8312 25 1 0.2621 -4.6827 -0.3125 26 1 1.4010 -4.7483 -1.6942 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086406787.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:20 Heat of formation + Delta-G solvation = -53.002728 kcal Electronic energy + Delta-G solvation = -10063.278204 eV Core-core repulsion = 8141.561103 eV Total energy + Delta-G solvation = -1921.717102 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.20532 -35.51959 -32.08150 -30.94907 -27.92478 -25.58971 -23.74121 -19.99052 -19.42390 -17.91435 -15.84599 -15.42393 -14.91025 -14.29998 -13.67137 -13.12397 -13.03061 -12.38382 -11.56649 -11.04799 -10.80902 -10.68057 -10.60466 -10.28993 -10.10193 -9.80723 -9.36002 -9.05099 -8.53440 -7.85893 -6.21013 -3.50840 3.45252 3.53148 3.63274 4.50076 4.65496 4.98998 5.11541 5.31279 5.54145 5.79347 5.81604 5.99237 6.01607 6.25954 6.31725 6.45529 6.53100 6.71587 6.86507 7.01465 7.33627 7.53860 7.80844 8.93554 9.54219 10.20416 11.27230 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.089899 B = 0.011194 C = 0.010964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 311.385156 B = 2500.774810 C = 2553.133159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 1.095 2.905 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.442 4.442 8 H 0.053 0.947 9 O -0.311 6.311 10 C 0.110 3.890 11 H 0.050 0.950 12 C -0.143 4.143 13 C -0.115 4.115 14 C 0.088 3.912 15 H 0.033 0.967 16 N -0.843 5.843 17 C -0.113 4.113 18 H 0.275 0.725 19 H 0.059 0.941 20 H 0.066 0.934 21 H 0.068 0.932 22 H 0.056 0.944 23 H 0.335 0.665 24 H 0.338 0.662 25 H 0.071 0.929 26 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.778 -10.482 0.413 11.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.211 4.211 3 Si 0.923 3.077 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.521 4.521 8 H 0.070 0.930 9 O -0.227 6.227 10 C 0.050 3.950 11 H 0.068 0.932 12 C -0.181 4.181 13 C -0.153 4.153 14 C -0.023 4.023 15 H 0.051 0.949 16 N -0.373 5.373 17 C -0.152 4.152 18 H 0.084 0.916 19 H 0.078 0.922 20 H 0.085 0.915 21 H 0.086 0.914 22 H 0.075 0.925 23 H 0.147 0.853 24 H 0.151 0.849 25 H 0.090 0.910 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.766 -8.136 0.503 9.442 hybrid contribution -0.056 -2.694 0.049 2.695 sum 4.710 -10.829 0.552 11.822 Atomic orbital electron populations 1.70508 1.06237 1.30663 1.48440 1.26031 0.97145 1.00360 0.97526 0.83074 0.73575 0.73994 0.77033 1.21693 1.21267 1.21256 1.21803 0.91222 0.84154 1.54967 0.92960 1.85338 1.33014 1.11245 1.93088 1.22546 0.93519 0.86107 0.92808 0.93165 1.22842 1.01425 0.93630 1.00206 1.22134 1.00554 0.97147 0.95501 1.21911 0.91956 0.95658 0.92822 0.94912 1.58840 1.34118 1.37975 1.06400 1.22386 0.99563 0.93308 0.99898 0.91563 0.92248 0.91510 0.91367 0.92516 0.85301 0.84925 0.91034 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -30.06 13.70 55.48 0.76 -29.30 15 2 C -0.01 -0.34 5.49 -17.51 -0.10 -0.44 15 3 Si 1.10 26.48 29.92 -169.99 -5.09 21.39 15 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 7 C -0.44 -13.58 9.82 30.88 0.30 -13.28 15 8 H 0.05 1.56 7.69 -52.49 -0.40 1.16 15 9 O -0.31 -9.16 8.97 -16.50 -0.15 -9.30 15 10 C 0.11 2.55 3.39 -24.75 -0.08 2.47 15 11 H 0.05 1.22 7.90 -51.93 -0.41 0.81 15 12 C -0.14 -2.88 6.55 -25.07 -0.16 -3.04 15 13 C -0.12 -1.82 6.58 -25.61 -0.17 -1.99 15 14 C 0.09 1.34 4.03 -66.59 -0.27 1.07 15 15 H 0.03 0.45 8.14 -51.93 -0.42 0.03 15 16 N -0.84 -11.14 9.12 -3.72 -0.03 -11.17 15 17 C -0.11 -2.17 6.24 -25.09 -0.16 -2.32 15 18 H 0.27 9.18 7.97 -40.82 -0.33 8.86 15 19 H 0.06 1.20 8.14 -51.93 -0.42 0.77 15 20 H 0.07 1.40 8.14 -51.93 -0.42 0.98 15 21 H 0.07 1.03 7.92 -51.93 -0.41 0.62 15 22 H 0.06 0.79 8.14 -51.93 -0.42 0.36 15 23 H 0.33 3.59 9.06 -39.29 -0.36 3.24 15 24 H 0.34 3.94 8.92 -39.29 -0.35 3.59 15 25 H 0.07 1.40 8.14 -51.92 -0.42 0.97 15 26 H 0.07 1.22 7.94 -51.93 -0.41 0.81 15 LS Contribution 223.25 15.07 3.36 3.36 Total: -1.00 -33.80 223.25 -5.36 -39.15 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -3.58 Total: 3.39 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -0.63 Total: -17.53 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.73 Total: -40.47 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.15 Total: -9.30 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -5.09 Total: 21.39 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -33.80 -5.36 -39.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086406787.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.850 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds