Wall clock time and date at job start Mon Mar 30 2020 02:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86792 * 119.99933 * 2 1 4 4 H 1.48503 * 109.46776 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47311 * 299.99637 * 3 2 1 6 6 H 1.48502 * 109.47596 * 59.99838 * 3 2 1 7 7 C 1.38634 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00014 * 180.02562 * 7 2 1 9 9 O 1.34926 * 119.99998 * 0.02562 * 7 2 1 10 10 C 1.42905 * 117.00002 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.43473 * 29.29670 * 10 9 7 12 12 C 1.54268 * 110.48606 * 266.75819 * 10 9 7 13 13 C 1.53873 * 106.59703 * 217.58190 * 12 10 9 14 14 C 1.54265 * 106.59997 * 359.97438 * 13 12 10 15 15 H 1.08996 * 110.49299 * 264.93519 * 14 13 12 16 16 N 1.46899 * 110.48548 * 142.42599 * 14 13 12 17 17 C 1.54888 * 104.19721 * 23.61451 * 14 13 12 18 18 H 0.97000 * 120.00008 * 0.02562 * 1 2 3 19 19 H 1.09002 * 110.02813 * 336.86074 * 12 10 9 20 20 H 1.08992 * 110.03427 * 98.29274 * 12 10 9 21 21 H 1.08993 * 110.03875 * 119.28743 * 13 12 10 22 22 H 1.09005 * 110.03120 * 240.71705 * 13 12 10 23 23 H 1.00896 * 111.00229 * 61.45478 * 16 14 13 24 24 H 1.00907 * 111.00062 * 185.41274 * 16 14 13 25 25 H 1.08992 * 110.76047 * 203.74196 * 17 14 13 26 26 H 1.09000 * 110.75534 * 80.36765 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3463 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8911 2.3965 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3343 -2.3691 0.0005 10 6 2.1126 -3.5676 0.0005 11 1 3.0669 -3.4017 0.5004 12 6 2.3381 -4.0650 -1.4423 13 6 2.2648 -5.6012 -1.3941 14 6 1.9980 -5.9838 0.0763 15 1 2.9339 -6.2081 0.5881 16 7 1.0847 -7.1319 0.1512 17 6 1.3373 -4.7214 0.6835 18 1 -0.4850 0.8400 -0.0004 19 1 1.5596 -3.6744 -2.0977 20 1 3.3189 -3.7488 -1.7972 21 1 1.4510 -5.9563 -2.0263 22 1 3.2103 -6.0306 -1.7256 23 1 1.4853 -7.9425 -0.2967 24 1 0.8351 -7.3337 1.1078 25 1 1.4768 -4.6941 1.7641 26 1 0.2785 -4.6789 0.4283 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086406789.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:21 Heat of formation + Delta-G solvation = -73.067228 kcal Electronic energy + Delta-G solvation = -10001.240349 eV Core-core repulsion = 8078.653185 eV Total energy + Delta-G solvation = -1922.587163 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.70866 -37.23553 -34.00502 -32.80434 -29.43869 -27.18836 -26.14979 -21.47684 -20.96434 -19.63638 -17.62163 -16.91575 -16.14438 -16.04798 -15.72525 -14.56351 -14.45301 -13.93633 -13.65907 -12.94989 -12.73056 -12.45917 -12.11295 -11.92751 -11.91225 -11.56683 -11.31930 -11.01674 -10.11468 -9.59608 -8.16958 -5.85987 1.39062 1.45176 1.55852 2.33427 3.15397 3.46212 3.61690 3.78256 4.07971 4.19593 4.45203 4.53414 4.59318 4.78318 4.94299 5.06083 5.09946 5.17108 5.30818 5.35362 5.42998 6.22670 6.30522 6.68996 7.26116 8.10469 9.08737 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.101405 B = 0.010845 C = 0.010417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 276.053210 B = 2581.210660 C = 2687.356094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.047 4.047 3 Si 1.006 2.994 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.373 4.373 8 H 0.072 0.928 9 O -0.328 6.328 10 C 0.077 3.923 11 H 0.045 0.955 12 C -0.139 4.139 13 C -0.105 4.105 14 C 0.097 3.903 15 H 0.059 0.941 16 N -0.848 5.848 17 C -0.109 4.109 18 H 0.260 0.740 19 H 0.042 0.958 20 H 0.063 0.937 21 H 0.070 0.930 22 H 0.085 0.915 23 H 0.353 0.647 24 H 0.349 0.651 25 H 0.065 0.935 26 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.862 -10.461 -0.069 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.239 4.239 3 Si 0.828 3.172 4 H -0.180 1.180 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.452 4.452 8 H 0.090 0.910 9 O -0.244 6.244 10 C 0.018 3.982 11 H 0.063 0.937 12 C -0.178 4.178 13 C -0.143 4.143 14 C -0.014 4.014 15 H 0.077 0.923 16 N -0.381 5.381 17 C -0.147 4.147 18 H 0.069 0.931 19 H 0.061 0.939 20 H 0.082 0.918 21 H 0.089 0.911 22 H 0.103 0.897 23 H 0.168 0.832 24 H 0.163 0.837 25 H 0.084 0.916 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.059 -9.942 -0.500 11.654 hybrid contribution 0.983 0.477 0.527 1.213 sum 7.042 -9.465 0.028 11.798 Atomic orbital electron populations 1.70218 1.07674 1.27097 1.53848 1.26256 0.96753 1.02115 0.98775 0.84683 0.78045 0.76480 0.77950 1.17997 1.20171 1.20108 1.21435 0.90729 0.83678 1.49331 0.91039 1.85629 1.34010 1.11857 1.92900 1.22955 0.93716 0.86311 0.95199 0.93685 1.22575 1.00873 0.96684 0.97666 1.22062 1.02397 0.93530 0.96275 1.21959 0.93579 0.90001 0.95885 0.92334 1.58619 1.47158 1.08606 1.23694 1.22472 0.99852 0.93324 0.99052 0.93126 0.93875 0.91794 0.91148 0.89672 0.83249 0.83721 0.91638 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.04 13.67 21.61 0.30 -61.74 15 2 C -0.05 -2.83 5.49 84.82 0.47 -2.36 15 3 Si 1.01 46.17 29.55 68.60 2.03 48.20 15 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 15 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 7 C -0.37 -22.72 9.82 67.91 0.67 -22.05 15 8 H 0.07 4.05 7.65 -2.91 -0.02 4.03 15 9 O -0.33 -19.92 9.50 -81.95 -0.78 -20.70 15 10 C 0.08 3.53 3.37 31.66 0.11 3.64 15 11 H 0.05 1.99 7.84 -2.39 -0.02 1.97 15 12 C -0.14 -5.49 6.56 31.32 0.21 -5.29 15 13 C -0.10 -3.09 6.53 31.32 0.20 -2.89 15 14 C 0.10 2.76 3.99 45.99 0.18 2.94 15 15 H 0.06 1.44 8.14 -2.39 -0.02 1.42 15 16 N -0.85 -19.99 9.26 -164.24 -1.52 -21.51 15 17 C -0.11 -4.18 6.28 31.88 0.20 -3.98 15 18 H 0.26 15.83 8.31 -92.71 -0.77 15.06 15 19 H 0.04 1.93 8.07 -2.39 -0.02 1.91 15 20 H 0.06 2.33 8.14 -2.39 -0.02 2.31 15 21 H 0.07 2.11 8.04 -2.39 -0.02 2.09 15 22 H 0.08 2.00 8.14 -2.38 -0.02 1.98 15 23 H 0.35 6.33 9.07 -89.70 -0.81 5.52 15 24 H 0.35 7.16 9.06 -89.69 -0.81 6.35 15 25 H 0.06 2.36 8.14 -2.39 -0.02 2.34 15 26 H 0.06 2.46 8.14 -2.39 -0.02 2.44 15 Total: -1.00 -73.11 224.10 1.60 -71.50 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -0.45 Total: 14.24 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 2.03 Total: -29.99 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -1.23 Total: -83.25 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.78 Total: -20.70 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -73.11 1.60 -71.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086406789.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.564 kcal (2) G-P(sol) polarization free energy of solvation -73.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds