Wall clock time and date at job start Mon Mar 30 2020 02:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86811 * 119.99631 * 2 1 4 4 H 1.48506 * 109.46642 * 269.99835 * 3 2 1 5 5 H 1.48502 * 109.47012 * 29.99527 * 3 2 1 6 6 H 1.48495 * 109.47152 * 149.99773 * 3 2 1 7 7 C 1.37875 * 120.00777 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99354 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00355 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46999 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47053 * 179.97438 * 10 9 7 12 12 C 1.46895 * 110.99789 * 179.97438 * 11 10 9 13 13 C 1.54038 * 113.81479 * 253.50169 * 12 11 10 14 14 O 1.44448 * 85.42745 * 223.24044 * 13 12 11 15 15 C 1.44176 * 93.37706 * 24.08897 * 14 13 12 16 16 H 0.96999 * 120.00276 * 0.02562 * 1 2 3 17 17 H 1.09001 * 109.47328 * 60.00043 * 9 7 2 18 18 H 1.09004 * 109.47043 * 299.99853 * 9 7 2 19 19 H 1.08992 * 109.47056 * 59.99641 * 10 9 7 20 20 H 1.09004 * 109.47006 * 299.99757 * 10 9 7 21 21 H 1.00902 * 111.00068 * 56.04103 * 11 10 9 22 22 H 1.09000 * 113.00160 * 25.33586 * 12 11 10 23 23 H 1.08993 * 113.86936 * 337.34677 * 13 12 11 24 24 H 1.09007 * 113.85992 * 109.05644 * 13 12 11 25 25 H 1.09003 * 113.86855 * 221.76387 * 15 14 13 26 26 H 1.09002 * 113.98352 * 90.07676 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1938 0.0011 10 6 4.0217 -2.6363 0.0010 11 7 5.4908 -2.6362 0.0009 12 6 6.0172 -4.0076 0.0014 13 6 6.6138 -4.4443 1.3528 14 8 7.6838 -5.0119 0.5657 15 6 7.4526 -4.1230 -0.5456 16 1 -0.4850 0.8400 -0.0004 17 1 3.8746 -0.6798 0.8911 18 1 3.8753 -0.6802 -0.8889 19 1 3.6587 -3.1499 -0.8891 20 1 3.6581 -3.1504 0.8908 21 1 5.8524 -2.1101 0.7823 22 1 5.3233 -4.7304 -0.4276 23 1 6.9251 -3.6140 1.9864 24 1 6.0130 -5.1845 1.8814 25 1 7.5157 -4.6086 -1.5194 26 1 8.0199 -3.1936 -0.4950 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087195308.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:42 Heat of formation + Delta-G solvation = -19.291171 kcal Electronic energy + Delta-G solvation = -9694.246776 eV Core-core repulsion = 7773.991518 eV Total energy + Delta-G solvation = -1920.255259 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.21270 -35.43393 -32.77231 -30.28949 -27.24492 -26.46540 -23.71223 -20.86796 -20.00580 -16.92095 -16.35187 -16.04809 -15.65012 -14.42071 -14.12645 -13.47802 -12.76784 -12.67161 -12.41296 -11.72953 -11.30948 -11.21167 -11.01892 -10.23004 -9.88237 -9.81315 -9.51831 -9.26641 -8.56686 -8.08274 -6.07177 -4.06145 3.30900 3.37879 3.41902 3.72182 4.29978 4.43585 4.68916 5.02914 5.23876 5.27413 5.35733 5.54977 5.86937 6.01827 6.09752 6.14068 6.19556 6.69741 7.03704 7.31794 7.48167 7.64048 7.81805 8.49409 8.96395 9.54892 11.06090 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.099412 B = 0.009016 C = 0.008611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 281.588386 B = 3104.683593 C = 3250.958229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.071 0.929 9 C -0.011 4.011 10 C 0.071 3.929 11 N -0.685 5.685 12 C 0.027 3.973 13 C 0.004 3.996 14 O -0.388 6.388 15 C 0.040 3.960 16 H 0.264 0.736 17 H 0.014 0.986 18 H 0.021 0.979 19 H 0.066 0.934 20 H 0.025 0.975 21 H 0.340 0.660 22 H 0.106 0.894 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.889 -5.138 1.011 12.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.711 3.289 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.089 0.911 9 C -0.049 4.049 10 C -0.057 4.057 11 N -0.316 5.316 12 C -0.085 4.085 13 C -0.075 4.075 14 O -0.306 6.306 15 C -0.038 4.038 16 H 0.073 0.927 17 H 0.032 0.968 18 H 0.040 0.960 19 H 0.085 0.915 20 H 0.043 0.957 21 H 0.159 0.841 22 H 0.124 0.876 23 H 0.098 0.902 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.953 -5.157 0.371 13.024 hybrid contribution -0.014 0.763 0.882 1.166 sum 11.939 -4.394 1.253 12.784 Atomic orbital electron populations 1.69913 1.06339 1.26984 1.50973 1.25011 0.94733 0.99239 0.94406 0.86726 0.80233 0.83387 0.78596 1.20202 1.21461 1.19026 1.21056 0.89320 0.94562 1.51234 0.91092 1.19563 0.96795 0.91740 0.96785 1.22039 0.83631 1.00305 0.99704 1.60509 1.10513 1.11198 1.49409 1.24871 0.96956 0.92317 0.94361 1.24837 0.88172 0.98353 0.96096 1.89668 1.56402 1.54193 1.30303 1.24194 0.94482 0.93579 0.91502 0.92673 0.96811 0.96040 0.91538 0.95657 0.84095 0.87577 0.90186 0.89375 0.89235 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.96 55.43 0.77 -27.06 15 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 15 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 15 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 15 7 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 15 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 15 9 C -0.01 -0.26 4.30 -27.88 -0.12 -0.38 15 10 C 0.07 1.39 5.48 -3.82 -0.02 1.37 15 11 N -0.69 -11.06 6.63 -113.70 -0.75 -11.81 15 12 C 0.03 0.37 4.40 -66.63 -0.29 0.07 15 13 C 0.00 0.05 8.87 37.64 0.33 0.39 15 14 O -0.39 -5.51 12.46 -35.23 -0.44 -5.94 15 15 C 0.04 0.50 9.02 37.64 0.34 0.84 15 16 H 0.26 7.58 8.31 -40.82 -0.34 7.24 15 17 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 15 18 H 0.02 0.51 7.57 -51.93 -0.39 0.12 15 19 H 0.07 1.33 8.13 -51.93 -0.42 0.91 15 20 H 0.03 0.49 8.14 -51.93 -0.42 0.07 15 21 H 0.34 5.12 8.21 -39.29 -0.32 4.80 15 22 H 0.11 1.45 7.89 -51.93 -0.41 1.04 15 23 H 0.08 0.92 7.82 -51.93 -0.41 0.51 15 24 H 0.09 1.01 8.14 -51.92 -0.42 0.59 15 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 LS Contribution 224.16 15.07 3.38 3.38 Total: -1.00 -30.63 224.16 -5.51 -36.14 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -3.60 Total: -0.72 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -0.19 Total: -11.05 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.02 Total: -38.87 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.44 Total: -5.94 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -30.63 -5.51 -36.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087195308.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.846 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds