Wall clock time and date at job start Mon Mar 30 2020 02:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86811 * 119.99631 * 2 1 4 4 H 1.48506 * 109.46642 * 269.99835 * 3 2 1 5 5 H 1.48502 * 109.47012 * 29.99527 * 3 2 1 6 6 H 1.48495 * 109.47152 * 149.99773 * 3 2 1 7 7 C 1.37875 * 120.00777 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99354 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00355 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46999 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47053 * 179.97438 * 10 9 7 12 12 C 1.46895 * 110.99789 * 179.97438 * 11 10 9 13 13 C 1.54038 * 113.81479 * 253.50169 * 12 11 10 14 14 O 1.44448 * 85.42745 * 223.24044 * 13 12 11 15 15 C 1.44176 * 93.37706 * 24.08897 * 14 13 12 16 16 H 0.96999 * 120.00276 * 0.02562 * 1 2 3 17 17 H 1.09001 * 109.47328 * 60.00043 * 9 7 2 18 18 H 1.09004 * 109.47043 * 299.99853 * 9 7 2 19 19 H 1.08992 * 109.47056 * 59.99641 * 10 9 7 20 20 H 1.09004 * 109.47006 * 299.99757 * 10 9 7 21 21 H 1.00902 * 111.00068 * 56.04103 * 11 10 9 22 22 H 1.09000 * 113.00160 * 25.33586 * 12 11 10 23 23 H 1.08993 * 113.86936 * 337.34677 * 13 12 11 24 24 H 1.09007 * 113.85992 * 109.05644 * 13 12 11 25 25 H 1.09003 * 113.86855 * 221.76387 * 15 14 13 26 26 H 1.09002 * 113.98352 * 90.07676 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1938 0.0011 10 6 4.0217 -2.6363 0.0010 11 7 5.4908 -2.6362 0.0009 12 6 6.0172 -4.0076 0.0014 13 6 6.6138 -4.4443 1.3528 14 8 7.6838 -5.0119 0.5657 15 6 7.4526 -4.1230 -0.5456 16 1 -0.4850 0.8400 -0.0004 17 1 3.8746 -0.6798 0.8911 18 1 3.8753 -0.6802 -0.8889 19 1 3.6587 -3.1499 -0.8891 20 1 3.6581 -3.1504 0.8908 21 1 5.8524 -2.1101 0.7823 22 1 5.3233 -4.7304 -0.4276 23 1 6.9251 -3.6140 1.9864 24 1 6.0130 -5.1845 1.8814 25 1 7.5157 -4.6086 -1.5194 26 1 8.0199 -3.1936 -0.4950 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087195308.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:42 Heat of formation + Delta-G solvation = -43.216795 kcal Electronic energy + Delta-G solvation = -9695.284269 eV Core-core repulsion = 7773.991518 eV Total energy + Delta-G solvation = -1921.292752 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.26083 -36.94735 -34.79285 -32.03230 -28.67043 -27.43512 -25.49797 -22.44464 -21.31829 -19.00180 -17.43922 -17.24055 -16.74967 -16.20765 -15.82325 -15.08472 -14.60887 -13.78737 -13.70524 -13.37613 -12.96141 -12.60783 -12.55662 -11.94814 -11.71329 -11.42921 -11.38483 -10.77102 -10.63914 -9.38450 -8.29814 -6.34886 1.38990 1.39799 1.52289 2.37223 2.71887 3.06075 3.13760 3.55027 4.00461 4.24989 4.41735 4.45949 4.51340 4.65676 4.84337 4.95202 5.03489 5.15340 5.29936 5.48528 5.62740 6.04698 6.23701 6.45122 6.73920 7.30417 8.86867 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.099412 B = 0.009016 C = 0.008611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 281.588386 B = 3104.683593 C = 3250.958229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.245 1.245 7 C -0.536 4.536 8 H 0.032 0.968 9 C -0.006 4.006 10 C 0.085 3.915 11 N -0.682 5.682 12 C 0.020 3.980 13 C 0.008 3.992 14 O -0.406 6.406 15 C 0.046 3.954 16 H 0.267 0.733 17 H 0.022 0.978 18 H 0.022 0.978 19 H 0.057 0.943 20 H 0.022 0.978 21 H 0.349 0.651 22 H 0.103 0.897 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.934 -4.464 1.186 14.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.168 1.168 7 C -0.574 4.574 8 H 0.050 0.950 9 C -0.044 4.044 10 C -0.044 4.044 11 N -0.315 5.315 12 C -0.092 4.092 13 C -0.070 4.070 14 O -0.324 6.324 15 C -0.031 4.031 16 H 0.076 0.924 17 H 0.040 0.960 18 H 0.041 0.959 19 H 0.076 0.924 20 H 0.041 0.959 21 H 0.168 0.832 22 H 0.121 0.879 23 H 0.111 0.889 24 H 0.115 0.885 25 H 0.122 0.878 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.025 -4.506 0.550 14.742 hybrid contribution -0.688 0.458 0.824 1.167 sum 13.338 -4.048 1.374 14.006 Atomic orbital electron populations 1.70067 1.08386 1.28269 1.52522 1.26020 0.95607 1.03641 0.93939 0.85581 0.79445 0.77933 0.79167 1.19331 1.21076 1.16794 1.21423 0.92031 0.93214 1.50751 0.94996 1.19462 0.93504 0.94504 0.96950 1.21698 0.85992 0.97504 0.99224 1.60408 1.07965 1.13014 1.50071 1.24981 0.97545 0.90838 0.95798 1.24922 0.87561 0.98931 0.95585 1.89661 1.56840 1.54850 1.31047 1.24280 0.93162 0.93914 0.91789 0.92433 0.95955 0.95941 0.92449 0.95936 0.83159 0.87868 0.88852 0.88474 0.87849 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.72 13.96 21.45 0.30 -59.42 15 2 C 0.00 0.28 5.47 84.65 0.46 0.74 15 3 Si 0.96 44.05 27.47 68.60 1.88 45.93 15 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 6 H -0.24 -10.36 6.54 99.48 0.65 -9.71 15 7 C -0.54 -30.79 9.66 25.60 0.25 -30.54 15 8 H 0.03 2.01 7.99 -2.91 -0.02 1.99 15 9 C -0.01 -0.29 4.30 29.85 0.13 -0.17 15 10 C 0.08 3.22 5.48 86.30 0.47 3.69 15 11 N -0.68 -20.44 6.63 -524.64 -3.48 -23.92 15 12 C 0.02 0.49 4.40 45.62 0.20 0.69 15 13 C 0.01 0.19 8.87 72.30 0.64 0.83 15 14 O -0.41 -10.54 12.46 -148.98 -1.86 -12.39 15 15 C 0.05 1.02 9.02 72.30 0.65 1.67 15 16 H 0.27 15.57 8.31 -92.71 -0.77 14.80 15 17 H 0.02 0.99 7.20 -2.39 -0.02 0.97 15 18 H 0.02 1.03 7.57 -2.38 -0.02 1.01 15 19 H 0.06 2.27 8.13 -2.39 -0.02 2.25 15 20 H 0.02 0.86 8.14 -2.38 -0.02 0.84 15 21 H 0.35 9.48 8.21 -89.69 -0.74 8.74 15 22 H 0.10 2.66 7.89 -2.39 -0.02 2.65 15 23 H 0.09 1.86 7.82 -2.39 -0.02 1.85 15 24 H 0.10 2.01 8.14 -2.38 -0.02 1.99 15 25 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 26 H 0.09 1.91 8.14 -2.39 -0.02 1.90 15 Total: -1.00 -65.06 224.16 0.02 -65.04 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.36 Total: 7.83 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: 2.81 Total: -23.08 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -3.18 Total: -83.33 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -1.86 Total: -12.39 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Total: -65.06 0.02 -65.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087195308.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.823 kcal (2) G-P(sol) polarization free energy of solvation -65.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds