Wall clock time and date at job start Mon Mar 30 2020 02:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.54038 * 113.81321 * 251.18891 * 13 12 2 15 15 O 1.44178 * 85.51485 * 223.19795 * 14 13 12 16 16 C 1.44183 * 93.34268 * 24.19196 * 15 14 13 17 17 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 18 18 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 19 19 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 20 20 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 21 21 H 1.00896 * 111.00679 * 321.05250 * 12 2 1 22 22 H 1.09001 * 112.99942 * 23.17318 * 13 12 2 23 23 H 1.09003 * 113.86589 * 337.33917 * 14 13 12 24 24 H 1.08994 * 113.86676 * 109.05098 * 14 13 12 25 25 H 1.09002 * 113.86611 * 221.66293 * 16 15 14 26 26 H 1.08996 * 113.97985 * 89.96775 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 1.0110 -0.0503 -3.4194 15 8 2.0753 0.1487 -4.3714 16 6 3.1035 -0.1965 -3.4214 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 -1.0277 0.0005 20 1 0.7082 1.1609 3.4844 21 1 1.4496 -1.4980 -1.4101 22 1 2.1573 1.2695 -2.0531 23 1 0.6189 -1.0672 -3.4024 24 1 0.2302 0.7088 -3.4658 25 1 3.9822 0.4466 -3.4694 26 1 3.3520 -1.2576 -3.4037 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087195467.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:56 Heat of formation + Delta-G solvation = -35.846464 kcal Electronic energy + Delta-G solvation = -10067.000224 eV Core-core repulsion = 8146.027074 eV Total energy + Delta-G solvation = -1920.973150 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.23335 -37.21826 -34.26139 -30.88328 -27.63468 -27.44188 -27.05567 -22.29653 -21.49620 -18.39924 -17.36182 -17.14977 -16.58574 -16.56626 -15.06548 -14.48723 -14.27934 -13.62057 -13.39015 -13.06272 -12.94015 -12.76176 -12.31903 -12.19035 -12.07923 -11.56625 -11.00540 -10.57849 -10.47387 -9.05050 -8.10111 -6.21483 1.42894 1.45108 1.57084 2.44469 2.77532 3.18545 3.38995 3.79753 4.08316 4.33800 4.44241 4.64842 4.74641 4.84127 4.98443 5.09074 5.11310 5.19138 5.40556 5.69767 5.82077 6.25963 6.59944 6.76571 6.93472 7.48801 8.95457 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.093700 B = 0.011324 C = 0.010613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 298.754010 B = 2472.087275 C = 2637.699007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.517 4.517 5 H 0.056 0.944 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.280 1.280 12 N -0.675 5.675 13 C 0.020 3.980 14 C 0.014 3.986 15 O -0.404 6.404 16 C 0.046 3.954 17 H 0.028 0.972 18 H 0.060 0.940 19 H 0.034 0.966 20 H 0.261 0.739 21 H 0.339 0.661 22 H 0.086 0.914 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.478 -2.374 -7.158 7.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.556 4.556 5 H 0.074 0.926 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.206 1.206 12 N -0.306 5.306 13 C -0.092 4.092 14 C -0.065 4.065 15 O -0.322 6.322 16 C -0.031 4.031 17 H 0.047 0.953 18 H 0.079 0.921 19 H 0.053 0.947 20 H 0.070 0.930 21 H 0.158 0.842 22 H 0.104 0.896 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.117 0.883 26 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.085 -2.109 -7.131 7.515 hybrid contribution -0.789 -0.054 0.937 1.226 sum 0.296 -2.163 -6.194 6.568 Atomic orbital electron populations 1.22266 0.99576 0.99449 1.00264 1.19056 0.90389 0.92642 0.87462 0.97891 1.21518 1.30431 1.12533 0.91094 0.92572 1.25725 0.95455 0.95870 1.01960 1.70013 1.38052 1.24305 1.23967 0.85458 0.78048 0.78592 0.79201 1.19243 1.20863 1.20628 1.60532 1.57606 1.09187 1.03263 1.24925 0.95484 0.97834 0.90983 1.24846 0.92682 1.02268 0.86693 1.89571 1.18478 1.88964 1.35182 1.24281 0.92907 1.01704 0.84228 0.95252 0.92118 0.94680 0.93001 0.84177 0.89568 0.88959 0.88894 0.88252 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.23 8.94 71.98 0.64 -6.59 15 2 C 0.21 10.49 2.56 44.17 0.11 10.61 15 3 H 0.00 0.17 7.47 -2.39 -0.02 0.16 15 4 C -0.52 -28.30 8.84 25.60 0.23 -28.07 15 5 H 0.06 3.09 7.81 -2.91 -0.02 3.06 15 6 C 0.01 0.44 5.30 84.66 0.45 0.89 15 7 N -0.92 -52.71 11.32 21.45 0.24 -52.47 15 8 Si 0.96 43.49 29.54 68.60 2.03 45.52 15 9 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 11 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 12 N -0.68 -27.21 6.37 -506.27 -3.22 -30.44 15 13 C 0.02 0.67 4.25 45.61 0.19 0.87 15 14 C 0.01 0.40 8.84 72.28 0.64 1.04 15 15 O -0.40 -12.84 12.45 -148.98 -1.86 -14.70 15 16 C 0.05 1.36 9.02 72.27 0.65 2.01 15 17 H 0.03 1.17 8.07 -2.39 -0.02 1.15 15 18 H 0.06 3.19 6.07 -2.39 -0.01 3.17 15 19 H 0.03 1.53 8.13 -2.38 -0.02 1.51 15 20 H 0.26 14.16 8.31 -92.71 -0.77 13.39 15 21 H 0.34 12.58 7.93 -89.70 -0.71 11.87 15 22 H 0.09 3.20 7.48 -2.39 -0.02 3.18 15 23 H 0.09 2.44 7.82 -2.39 -0.02 2.42 15 24 H 0.09 2.55 8.14 -2.39 -0.02 2.53 15 25 H 0.10 2.64 8.14 -2.39 -0.02 2.63 15 26 H 0.09 2.53 8.14 -2.39 -0.02 2.52 15 Total: -1.00 -59.01 222.26 0.56 -58.45 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.45 Total: 12.88 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 2.92 Total: -19.25 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -2.98 Total: -82.90 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -1.86 Total: -14.70 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -59.01 0.56 -58.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087195467.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.604 kcal (2) G-P(sol) polarization free energy of solvation -59.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds