Wall clock time and date at job start Mon Mar 30 2020 01:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 N 1.36600 * 119.99633 * 180.27887 * 9 7 2 11 11 C 1.46850 * 110.99428 * 243.92994 * 10 9 7 12 12 C 1.53042 * 109.52229 * 174.15931 * 11 10 9 13 13 C 1.53125 * 109.27421 * 59.18275 * 12 11 10 14 14 C 1.53116 * 109.15956 * 302.34282 * 13 12 11 15 15 C 1.46849 * 111.00265 * 119.72519 * 10 9 7 16 16 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 17 17 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 18 18 H 1.08998 * 109.46329 * 294.17560 * 11 10 9 19 19 H 1.09001 * 109.46140 * 54.14665 * 11 10 9 20 20 H 1.08993 * 109.50344 * 299.24236 * 12 11 10 21 21 H 1.08998 * 109.50067 * 179.11805 * 12 11 10 22 22 H 1.09001 * 109.52095 * 182.44352 * 13 12 11 23 23 H 1.08995 * 109.52510 * 62.25152 * 13 12 11 24 24 H 1.08997 * 109.50400 * 297.71674 * 14 13 12 25 25 H 1.08997 * 109.50414 * 177.59679 * 14 13 12 26 26 H 1.09004 * 109.46027 * 305.85224 * 15 10 9 27 27 H 1.08997 * 109.46240 * 65.81758 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 7 2.0085 -3.5711 0.0068 11 6 1.7554 -4.3312 -1.2239 12 6 2.6451 -5.5762 -1.2481 13 6 2.3399 -6.4396 -0.0208 14 6 2.5648 -5.6095 1.2461 15 6 1.6775 -4.3636 1.1980 16 1 -0.4850 0.8401 -0.0004 17 1 0.3555 -2.3880 0.0005 18 1 0.7084 -4.6325 -1.2559 19 1 1.9803 -3.7073 -2.0889 20 1 3.6926 -5.2753 -1.2299 21 1 2.4458 -6.1484 -2.1541 22 1 3.0017 -7.3056 -0.0110 23 1 1.3028 -6.7728 -0.0586 24 1 3.6110 -5.3092 1.3034 25 1 2.3081 -6.2054 2.1219 26 1 1.8457 -3.7631 2.0920 27 1 0.6308 -4.6646 1.1545 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096868739.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:41 Heat of formation + Delta-G solvation = 10.161241 kcal Electronic energy + Delta-G solvation = -10066.241374 eV Core-core repulsion = 8244.981930 eV Total energy + Delta-G solvation = -1821.259444 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.83515 -36.11564 -33.72978 -31.68258 -30.11641 -26.08745 -23.82426 -23.53508 -20.73653 -19.23615 -17.97745 -16.19850 -15.87831 -15.53560 -15.40281 -14.51601 -14.29478 -14.11946 -13.12077 -13.07230 -12.80292 -12.21352 -12.11357 -12.04190 -11.57765 -11.44845 -11.27391 -11.04111 -9.31644 -9.19611 -7.96701 -5.30314 1.48439 1.51832 1.60797 2.46528 3.07370 3.38434 3.89625 4.02636 4.11871 4.36143 4.46623 4.50583 4.66493 4.75792 4.99595 5.01103 5.05834 5.23885 5.24621 5.33508 5.51529 5.63780 6.35699 6.45273 7.28373 8.17628 8.55616 9.27872 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.088715 B = 0.011666 C = 0.011578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.541996 B = 2399.503998 C = 2417.696167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.079 4.079 3 Si 0.988 3.012 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.217 4.217 8 H 0.078 0.922 9 N -0.593 5.593 10 N -0.305 5.305 11 C 0.038 3.962 12 C -0.106 4.106 13 C -0.115 4.115 14 C -0.105 4.105 15 C 0.038 3.962 16 H 0.253 0.747 17 H 0.359 0.641 18 H 0.015 0.985 19 H 0.052 0.948 20 H 0.068 0.932 21 H 0.085 0.915 22 H 0.091 0.909 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.052 0.948 27 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.121 -11.340 0.014 12.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.271 4.271 3 Si 0.815 3.185 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.327 5.327 10 N -0.121 5.121 11 C -0.091 4.091 12 C -0.144 4.144 13 C -0.153 4.153 14 C -0.144 4.144 15 C -0.090 4.090 16 H 0.061 0.939 17 H 0.194 0.806 18 H 0.034 0.966 19 H 0.070 0.930 20 H 0.086 0.914 21 H 0.104 0.896 22 H 0.110 0.890 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 5.758 -11.113 0.038 12.516 hybrid contribution -1.314 0.924 -0.049 1.607 sum 4.444 -10.189 -0.011 11.116 Atomic orbital electron populations 1.69846 1.06754 1.26338 1.59949 1.25650 0.96541 1.01205 1.03670 0.84933 0.77505 0.78473 0.77539 1.21165 1.21979 1.19310 1.19503 0.91602 0.83054 1.40678 0.90376 1.41984 1.03134 0.97607 1.90017 1.62399 1.50482 0.97875 1.01394 1.22659 0.97343 0.95644 0.93470 1.21562 0.99564 0.93959 0.99332 1.21587 1.01966 0.98132 0.93596 1.21558 0.99709 0.94028 0.99103 1.22633 0.97153 0.95383 0.93869 0.93860 0.80613 0.96646 0.92973 0.91375 0.89627 0.89050 0.92267 0.91365 0.89568 0.92890 0.96555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.37 13.06 21.65 0.28 -61.09 15 2 C -0.08 -4.65 5.50 84.86 0.47 -4.18 15 3 Si 0.99 47.30 29.55 68.60 2.03 49.33 15 4 H -0.28 -13.31 7.11 99.48 0.71 -12.61 15 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 15 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 7 C -0.22 -12.76 10.30 84.03 0.87 -11.89 15 8 H 0.08 4.50 7.83 -2.91 -0.02 4.48 15 9 N -0.59 -32.66 4.82 -54.26 -0.26 -32.92 15 10 N -0.30 -13.79 4.88 -513.99 -2.51 -16.29 15 11 C 0.04 1.45 5.83 86.33 0.50 1.95 15 12 C -0.11 -2.93 6.09 30.65 0.19 -2.74 15 13 C -0.12 -2.75 6.00 30.67 0.18 -2.56 15 14 C -0.11 -2.91 6.09 30.64 0.19 -2.73 15 15 C 0.04 1.47 5.83 86.32 0.50 1.97 15 16 H 0.25 15.26 8.31 -92.71 -0.77 14.49 15 17 H 0.36 21.05 8.03 -215.50 -1.73 19.32 15 18 H 0.02 0.60 8.14 -2.39 -0.02 0.58 15 19 H 0.05 2.19 8.14 -2.39 -0.02 2.17 15 20 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 21 H 0.09 1.94 8.14 -2.39 -0.02 1.92 15 22 H 0.09 1.65 8.14 -2.39 -0.02 1.63 15 23 H 0.06 1.39 8.14 -2.39 -0.02 1.37 15 24 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 15 26 H 0.05 2.21 8.14 -2.39 -0.02 2.19 15 27 H 0.02 0.63 8.14 -2.39 -0.02 0.61 15 Total: -1.00 -65.92 224.88 1.84 -64.08 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -0.60 Total: 17.08 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 2.90 Total: -20.18 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -2.49 Total: -110.31 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -65.92 1.84 -64.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096868739.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.240 kcal (2) G-P(sol) polarization free energy of solvation -65.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds