Wall clock time and date at job start Mon Mar 30 2020 01:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.53965 * 298.62519 * 9 7 2 11 11 N 1.47317 * 110.59811 * 175.63186 * 9 7 2 12 12 C 1.34538 * 106.57230 * 241.47173 * 11 9 7 13 13 O 1.21487 * 123.79169 * 180.02562 * 12 11 9 14 14 O 1.33899 * 112.41592 * 359.97438 * 12 11 9 15 15 C 1.34480 * 111.68473 * 359.97438 * 14 12 11 16 16 O 1.20820 * 127.13007 * 180.02562 * 15 14 12 17 17 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 18 18 H 0.96998 * 126.70987 * 61.43440 * 11 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6360 -2.5856 0.8963 11 7 2.1827 -3.6354 -0.1039 12 6 1.8758 -4.2798 -1.2443 13 8 2.4561 -5.2723 -1.6369 14 8 0.8581 -3.7048 -1.8976 15 6 0.3968 -2.6231 -1.2454 16 8 -0.5101 -1.8997 -1.5829 17 1 -0.4850 -0.8401 -0.0004 18 1 2.8812 -3.8724 0.5261 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104630120.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:09 Heat of formation + Delta-G solvation = -100.922462 kcal Electronic energy + Delta-G solvation = -9920.338563 eV Core-core repulsion = 7724.877316 eV Total energy + Delta-G solvation = -2195.461246 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 171.036 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.90447 -38.09555 -36.43412 -34.99474 -32.67289 -27.48729 -24.26920 -23.01436 -21.26759 -17.87378 -17.45567 -16.75015 -15.87267 -14.94814 -14.78249 -14.03033 -13.63785 -13.20877 -13.01848 -11.68611 -11.02202 -10.96466 -10.41479 -10.27211 -9.89731 -9.71908 -8.81987 -8.61042 -6.72968 -4.65080 2.36485 3.06927 3.26889 3.29820 3.37301 3.48492 3.75435 4.25413 4.75855 5.20026 5.84194 6.22534 7.07373 7.31872 7.68974 7.93330 8.00706 8.38105 8.48632 9.08805 10.62215 Molecular weight = 171.04amu Principal moments of inertia in cm(-1) A = 0.073341 B = 0.017762 C = 0.015486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.688574 B = 1575.993449 C = 1807.608671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.029 3.971 3 Si 1.079 2.921 4 H -0.284 1.284 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.629 4.629 8 H 0.075 0.925 9 C 0.193 3.807 10 H 0.082 0.918 11 N -0.712 5.712 12 C 0.658 3.342 13 O -0.528 6.528 14 O -0.332 6.332 15 C 0.468 3.532 16 O -0.406 6.406 17 H 0.289 0.711 18 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.861 -2.046 2.217 4.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.184 4.184 3 Si 0.905 3.095 4 H -0.210 1.210 5 H -0.209 1.209 6 H -0.202 1.202 7 C -0.665 4.665 8 H 0.094 0.906 9 C 0.087 3.913 10 H 0.099 0.901 11 N -0.382 5.382 12 C 0.410 3.590 13 O -0.413 6.413 14 O -0.245 6.245 15 C 0.307 3.693 16 O -0.282 6.282 17 H 0.104 0.896 18 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 2.223 -0.603 1.534 2.767 hybrid contribution 0.506 -1.741 0.182 1.823 sum 2.729 -2.344 1.717 3.986 Atomic orbital electron populations 1.70697 1.06751 1.33621 1.38354 1.26097 0.96388 1.03151 0.92758 0.83391 0.74851 0.74369 0.76936 1.21045 1.20851 1.20201 1.21823 0.95122 0.88544 1.61011 0.90644 1.20387 0.88960 0.88129 0.93796 0.90056 1.46160 1.38205 1.29989 1.23818 1.18239 0.78318 0.82311 0.80144 1.91007 1.53717 1.25036 1.71562 1.84760 1.45656 1.42269 1.51798 1.25046 0.81738 0.75943 0.86534 1.90722 1.26848 1.39275 1.71363 0.89602 0.72009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.04 12.76 55.43 0.71 -23.34 13 2 C 0.03 0.75 5.31 -17.82 -0.09 0.65 13 3 Si 1.08 22.87 29.90 -169.99 -5.08 17.79 13 4 H -0.28 -5.88 7.11 56.52 0.40 -5.48 13 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 13 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 13 7 C -0.63 -15.62 8.92 -34.44 -0.31 -15.93 13 8 H 0.08 1.83 7.81 -52.49 -0.41 1.42 13 9 C 0.19 4.32 3.31 -69.36 -0.23 4.10 13 10 H 0.08 1.77 8.07 -51.93 -0.42 1.35 13 11 N -0.71 -13.63 6.23 -60.31 -0.38 -14.01 13 12 C 0.66 14.09 9.24 53.95 0.50 14.58 13 13 O -0.53 -12.01 18.04 -19.04 -0.34 -12.35 13 14 O -0.33 -7.58 10.49 -26.30 -0.28 -7.86 13 15 C 0.47 11.23 7.99 36.44 0.29 11.52 13 16 O -0.41 -10.70 14.82 -18.23 -0.27 -10.98 13 17 H 0.29 8.05 4.91 -40.82 -0.20 7.85 13 18 H 0.44 6.88 8.96 -40.82 -0.37 6.52 13 LS Contribution 178.09 15.07 2.68 2.68 Total: -1.00 -29.23 178.09 -2.99 -32.22 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -0.19 Total: 0.91 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 0.16 Total: 14.93 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.33 Total: -37.34 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.89 Total: -31.18 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.08 Total: 17.79 kcal Total LS contribution 2.68 Total: 2.68 kcal Total: -29.23 -2.99 -32.22 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104630120.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.705 kcal (2) G-P(sol) polarization free energy of solvation -29.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds