Wall clock time and date at job start Mon Mar 30 2020 01:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.53965 * 298.62519 * 9 7 2 11 11 N 1.47317 * 110.59811 * 175.63186 * 9 7 2 12 12 C 1.34538 * 106.57230 * 241.47173 * 11 9 7 13 13 O 1.21487 * 123.79169 * 180.02562 * 12 11 9 14 14 O 1.33899 * 112.41592 * 359.97438 * 12 11 9 15 15 C 1.34480 * 111.68473 * 359.97438 * 14 12 11 16 16 O 1.20820 * 127.13007 * 180.02562 * 15 14 12 17 17 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 18 18 H 0.96998 * 126.70987 * 61.43440 * 11 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6360 -2.5856 0.8963 11 7 2.1827 -3.6354 -0.1039 12 6 1.8758 -4.2798 -1.2443 13 8 2.4561 -5.2723 -1.6369 14 8 0.8581 -3.7048 -1.8976 15 6 0.3968 -2.6231 -1.2454 16 8 -0.5101 -1.8997 -1.5829 17 1 -0.4850 -0.8401 -0.0004 18 1 2.8812 -3.8724 0.5261 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104630120.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:09 Heat of formation + Delta-G solvation = -122.440484 kcal Electronic energy + Delta-G solvation = -9921.271654 eV Core-core repulsion = 7724.877316 eV Total energy + Delta-G solvation = -2196.394338 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 171.036 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -43.72399 -39.99297 -38.29229 -36.80466 -34.56392 -29.35473 -26.20775 -24.82530 -23.07733 -19.73243 -19.29153 -18.58798 -17.71665 -16.80048 -16.59054 -15.78437 -15.50084 -15.05834 -14.83982 -13.56659 -12.91532 -12.61966 -12.19048 -11.95078 -11.79353 -11.53854 -10.72566 -10.38558 -8.73723 -6.66790 0.49831 1.28818 1.57503 1.60341 1.64935 1.84799 2.01349 2.52680 2.87958 3.31103 4.04305 4.44121 5.28873 5.61955 5.81892 6.03621 6.12939 6.38469 6.83306 7.14739 8.61764 Molecular weight = 171.04amu Principal moments of inertia in cm(-1) A = 0.073341 B = 0.017762 C = 0.015486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.688574 B = 1575.993449 C = 1807.608671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C -0.015 4.015 3 Si 1.121 2.879 4 H -0.276 1.276 5 H -0.257 1.257 6 H -0.286 1.286 7 C -0.634 4.634 8 H 0.083 0.917 9 C 0.195 3.805 10 H 0.095 0.905 11 N -0.685 5.685 12 C 0.660 3.340 13 O -0.538 6.538 14 O -0.338 6.338 15 C 0.469 3.531 16 O -0.433 6.433 17 H 0.280 0.720 18 H 0.454 0.546 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.074 -1.967 2.722 5.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.221 4.221 3 Si 0.941 3.059 4 H -0.202 1.202 5 H -0.181 1.181 6 H -0.212 1.212 7 C -0.671 4.671 8 H 0.101 0.899 9 C 0.088 3.912 10 H 0.112 0.888 11 N -0.357 5.357 12 C 0.412 3.588 13 O -0.424 6.424 14 O -0.250 6.250 15 C 0.310 3.690 16 O -0.311 6.311 17 H 0.094 0.906 18 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 3.478 -0.563 2.071 4.087 hybrid contribution 0.141 -1.848 0.014 1.853 sum 3.619 -2.411 2.085 4.823 Atomic orbital electron populations 1.70791 1.07905 1.33211 1.41081 1.27394 0.96348 1.06589 0.91818 0.82869 0.74056 0.70736 0.78237 1.20191 1.18145 1.21186 1.22132 0.95679 0.89256 1.59988 0.89874 1.20307 0.89181 0.88292 0.93386 0.88792 1.45954 1.37950 1.28430 1.23346 1.18213 0.78006 0.82230 0.80392 1.91011 1.54002 1.25564 1.71861 1.84734 1.46131 1.41984 1.52159 1.25203 0.81419 0.75637 0.86712 1.90709 1.28110 1.40324 1.72007 0.90615 0.69854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.73 12.76 21.45 0.27 -49.46 13 2 C -0.01 -0.75 5.31 84.66 0.45 -0.30 13 3 Si 1.12 44.47 29.90 68.60 2.05 46.52 13 4 H -0.28 -10.53 7.11 99.48 0.71 -9.82 13 5 H -0.26 -9.09 7.11 99.48 0.71 -8.38 13 6 H -0.29 -11.72 7.11 99.48 0.71 -11.02 13 7 C -0.63 -30.26 8.92 25.60 0.23 -30.03 13 8 H 0.08 3.79 7.81 -2.91 -0.02 3.77 13 9 C 0.19 8.39 3.31 43.62 0.14 8.53 13 10 H 0.10 3.92 8.07 -2.39 -0.02 3.90 13 11 N -0.68 -24.50 6.23 -575.80 -3.59 -28.09 13 12 C 0.66 26.92 9.24 129.83 1.20 28.12 13 13 O -0.54 -23.37 18.04 19.67 0.35 -23.02 13 14 O -0.34 -15.00 10.49 30.79 0.32 -14.67 13 15 C 0.47 22.18 7.99 71.51 0.57 22.75 13 16 O -0.43 -22.91 14.82 21.49 0.32 -22.60 13 17 H 0.28 15.64 4.91 -92.70 -0.46 15.18 13 18 H 0.45 12.89 8.96 -92.71 -0.83 12.06 13 Total: -1.00 -59.68 178.09 3.12 -56.56 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 0.79 Total: 5.69 kcal Atomic # 6 Polarization: 26.47 SS G_CDS: 2.59 Total: 29.06 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -3.31 Total: -77.55 kcal Atomic # 8 Polarization: -61.28 SS G_CDS: 1.00 Total: -60.29 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.05 Total: 46.52 kcal Total: -59.68 3.12 -56.56 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104630120.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.876 kcal (2) G-P(sol) polarization free energy of solvation -59.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds