Wall clock time and date at job start Mon Mar 30 2020 01:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99746 * 2 1 4 4 H 1.48498 * 109.47266 * 240.00394 * 3 2 1 5 5 H 1.48507 * 109.46963 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47288 * 120.00004 * 3 2 1 7 7 C 1.37878 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99941 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47232 * 300.00225 * 9 7 2 11 11 N 1.46905 * 109.46972 * 60.00486 * 9 7 2 12 12 C 1.53000 * 109.46841 * 180.02562 * 9 7 2 13 13 H 1.09002 * 110.27543 * 300.70129 * 12 9 7 14 14 C 1.54592 * 110.30731 * 178.61253 * 12 9 7 15 15 C 1.55195 * 102.80101 * 219.05076 * 14 12 9 16 16 N 1.48532 * 103.23847 * 37.43736 * 15 14 12 17 17 C 1.47903 * 105.81651 * 320.76579 * 16 15 14 18 18 H 0.96994 * 120.00598 * 0.02562 * 1 2 3 19 19 H 1.00904 * 110.99294 * 296.04163 * 11 9 7 20 20 H 1.00895 * 111.00290 * 59.99816 * 11 9 7 21 21 H 1.09001 * 110.72451 * 337.38875 * 14 12 9 22 22 H 1.08997 * 110.72647 * 100.67251 * 14 12 9 23 23 H 1.08996 * 110.68289 * 278.98152 * 15 14 12 24 24 H 1.09006 * 110.64055 * 155.86031 * 15 14 12 25 25 H 1.00907 * 110.99988 * 200.25775 * 16 15 14 26 26 H 1.08995 * 109.91938 * 265.97850 * 17 16 15 27 27 H 1.09002 * 109.91571 * 144.68245 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8896 11 7 0.4062 -2.5768 -1.1998 12 6 2.2455 -3.6620 -0.0005 13 1 2.8877 -3.6098 -0.8797 14 6 1.4926 -5.0117 0.0346 15 6 2.3689 -5.8697 0.9857 16 7 2.8107 -4.8934 2.0142 17 6 3.0947 -3.6391 1.2839 18 1 -0.4851 0.8399 -0.0004 19 1 -0.3012 -1.8573 -1.1907 20 1 0.9639 -2.5252 -2.0390 21 1 0.4901 -4.8837 0.4431 22 1 1.4511 -5.4563 -0.9598 23 1 3.2259 -6.2815 0.4528 24 1 1.7780 -6.6655 1.4393 25 1 3.6323 -5.2244 2.4976 26 1 4.1531 -3.5897 1.0284 27 1 2.8175 -2.7815 1.8970 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104636334.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:37 Heat of formation + Delta-G solvation = -11.581107 kcal Electronic energy + Delta-G solvation = -10145.993530 eV Core-core repulsion = 8323.791267 eV Total energy + Delta-G solvation = -1822.202263 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.96813 -34.26038 -31.34020 -28.81915 -28.24618 -25.39571 -21.74138 -20.76550 -18.85747 -16.53502 -15.92395 -14.95300 -14.25545 -13.75414 -12.99597 -12.80540 -12.39080 -11.57762 -11.31451 -11.09902 -11.04556 -10.78332 -10.52375 -10.22852 -9.95472 -9.59247 -9.16110 -8.52263 -7.99200 -7.09098 -5.99746 -4.15651 3.26853 3.32361 3.34653 4.37786 4.85135 5.22018 5.46249 5.59380 5.74927 5.86549 6.10578 6.42585 6.46112 6.61918 6.79251 6.87757 7.02030 7.21297 7.40445 7.76822 7.82910 7.89399 8.24454 8.80202 9.05587 9.23566 9.56000 10.97859 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.069142 B = 0.014365 C = 0.012702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.867809 B = 1948.718711 C = 2203.898251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.221 3.779 10 H 0.039 0.961 11 N -0.853 5.853 12 C -0.081 4.081 13 H 0.053 0.947 14 C -0.103 4.103 15 C 0.032 3.968 16 N -0.675 5.675 17 C 0.051 3.949 18 H 0.264 0.736 19 H 0.352 0.648 20 H 0.307 0.693 21 H 0.074 0.926 22 H 0.059 0.941 23 H 0.029 0.971 24 H 0.070 0.930 25 H 0.324 0.676 26 H 0.024 0.976 27 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.302 -6.204 0.223 7.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.588 4.588 8 H 0.070 0.930 9 C 0.111 3.889 10 H 0.057 0.943 11 N -0.381 5.381 12 C -0.101 4.101 13 H 0.072 0.928 14 C -0.142 4.142 15 C -0.098 4.098 16 N -0.303 5.303 17 C -0.078 4.078 18 H 0.074 0.926 19 H 0.167 0.833 20 H 0.115 0.885 21 H 0.093 0.907 22 H 0.077 0.923 23 H 0.047 0.953 24 H 0.088 0.912 25 H 0.138 0.862 26 H 0.043 0.957 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.249 -6.615 0.769 7.409 hybrid contribution 1.842 1.821 -0.665 2.674 sum 5.090 -4.794 0.103 6.993 Atomic orbital electron populations 1.69736 1.05826 1.27007 1.50835 1.25028 0.94878 0.99188 0.94682 0.86664 0.79624 0.83148 0.78562 1.20418 1.21285 1.20267 1.21974 0.93477 0.92122 1.51199 0.92979 1.18946 0.89759 0.89236 0.90985 0.94277 1.59474 1.18596 1.55813 1.04201 1.21963 0.96945 0.95892 0.95265 0.92812 1.22434 0.99368 0.94858 0.97496 1.23144 0.97872 0.95445 0.93298 1.63129 1.36836 1.04227 1.26077 1.22699 0.96529 0.92827 0.95762 0.92616 0.83270 0.88458 0.90746 0.92251 0.95273 0.91192 0.86191 0.95748 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 11.54 55.43 0.64 -24.65 15 2 C 0.06 1.76 5.38 -17.82 -0.10 1.66 15 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 15 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.55 -14.82 7.84 -34.44 -0.27 -15.09 15 8 H 0.05 1.40 7.56 -52.49 -0.40 1.00 15 9 C 0.22 5.56 2.00 -68.86 -0.14 5.42 15 10 H 0.04 1.12 8.14 -51.93 -0.42 0.70 15 11 N -0.85 -20.67 8.86 -5.65 -0.05 -20.72 15 12 C -0.08 -1.72 2.68 -89.26 -0.24 -1.96 15 13 H 0.05 1.15 8.14 -51.93 -0.42 0.72 15 14 C -0.10 -1.95 6.31 -24.73 -0.16 -2.10 15 15 C 0.03 0.51 7.56 -1.76 -0.01 0.50 15 16 N -0.67 -11.82 7.51 -109.93 -0.83 -12.64 15 17 C 0.05 1.01 6.67 -2.75 -0.02 0.99 15 18 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 19 H 0.35 9.21 7.08 -39.29 -0.28 8.94 15 20 H 0.31 7.15 8.99 -39.29 -0.35 6.80 15 21 H 0.07 1.53 7.86 -51.93 -0.41 1.12 15 22 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.03 0.43 8.14 -51.93 -0.42 0.01 15 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.32 4.77 8.92 -39.29 -0.35 4.42 15 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 15 27 H 0.09 2.01 7.20 -51.93 -0.37 1.63 15 LS Contribution 221.97 15.07 3.35 3.35 Total: -1.00 -27.69 221.97 -6.67 -34.37 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -3.83 Total: 14.66 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.93 Total: -10.57 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.24 Total: -58.01 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -27.69 -6.67 -34.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104636334.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.785 kcal (2) G-P(sol) polarization free energy of solvation -27.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds