Wall clock time and date at job start Mon Mar 30 2020 01:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99746 * 2 1 4 4 H 1.48498 * 109.47266 * 240.00394 * 3 2 1 5 5 H 1.48507 * 109.46963 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47288 * 120.00004 * 3 2 1 7 7 C 1.37878 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99941 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47232 * 300.00225 * 9 7 2 11 11 N 1.46905 * 109.46972 * 60.00486 * 9 7 2 12 12 C 1.53000 * 109.46841 * 180.02562 * 9 7 2 13 13 H 1.09002 * 110.27543 * 300.70129 * 12 9 7 14 14 C 1.54592 * 110.30731 * 178.61253 * 12 9 7 15 15 C 1.55195 * 102.80101 * 219.05076 * 14 12 9 16 16 N 1.48532 * 103.23847 * 37.43736 * 15 14 12 17 17 C 1.47903 * 105.81651 * 320.76579 * 16 15 14 18 18 H 0.96994 * 120.00598 * 0.02562 * 1 2 3 19 19 H 1.00904 * 110.99294 * 296.04163 * 11 9 7 20 20 H 1.00895 * 111.00290 * 59.99816 * 11 9 7 21 21 H 1.09001 * 110.72451 * 337.38875 * 14 12 9 22 22 H 1.08997 * 110.72647 * 100.67251 * 14 12 9 23 23 H 1.08996 * 110.68289 * 278.98152 * 15 14 12 24 24 H 1.09006 * 110.64055 * 155.86031 * 15 14 12 25 25 H 1.00907 * 110.99988 * 200.25775 * 16 15 14 26 26 H 1.08995 * 109.91938 * 265.97850 * 17 16 15 27 27 H 1.09002 * 109.91571 * 144.68245 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8896 11 7 0.4062 -2.5768 -1.1998 12 6 2.2455 -3.6620 -0.0005 13 1 2.8877 -3.6098 -0.8797 14 6 1.4926 -5.0117 0.0346 15 6 2.3689 -5.8697 0.9857 16 7 2.8107 -4.8934 2.0142 17 6 3.0947 -3.6391 1.2839 18 1 -0.4851 0.8399 -0.0004 19 1 -0.3012 -1.8573 -1.1907 20 1 0.9639 -2.5252 -2.0390 21 1 0.4901 -4.8837 0.4431 22 1 1.4511 -5.4563 -0.9598 23 1 3.2259 -6.2815 0.4528 24 1 1.7780 -6.6655 1.4393 25 1 3.6323 -5.2244 2.4976 26 1 4.1531 -3.5897 1.0284 27 1 2.8175 -2.7815 1.8970 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104636334.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:36 Heat of formation + Delta-G solvation = -33.421430 kcal Electronic energy + Delta-G solvation = -10146.940598 eV Core-core repulsion = 8323.791267 eV Total energy + Delta-G solvation = -1823.149331 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.55004 -36.16621 -33.33682 -30.41854 -29.88905 -27.40700 -23.60909 -22.20747 -20.61423 -18.52617 -17.49196 -16.82022 -15.98225 -15.59618 -14.76878 -14.55665 -13.99175 -13.27565 -13.01145 -12.99158 -12.75778 -12.55063 -12.33565 -11.99269 -11.67379 -11.37858 -11.02081 -10.61957 -9.36864 -9.13378 -8.07554 -6.31996 1.38328 1.39232 1.47026 2.38353 3.09616 3.48559 3.99241 4.06677 4.19617 4.46921 4.67758 4.74345 4.85194 5.04676 5.11499 5.22623 5.40809 5.45059 5.67993 5.75113 5.98900 6.17893 6.59397 6.73039 7.00053 7.17453 7.44184 8.87327 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.069142 B = 0.014365 C = 0.012702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.867809 B = 1948.718711 C = 2203.898251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.561 4.561 8 H 0.051 0.949 9 C 0.224 3.776 10 H -0.005 1.005 11 N -0.843 5.843 12 C -0.081 4.081 13 H 0.056 0.944 14 C -0.101 4.101 15 C 0.040 3.960 16 N -0.684 5.684 17 C 0.057 3.943 18 H 0.264 0.736 19 H 0.340 0.660 20 H 0.315 0.685 21 H 0.049 0.951 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.089 0.911 25 H 0.343 0.657 26 H 0.042 0.958 27 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.609 -6.857 0.010 8.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.782 3.218 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.601 4.601 8 H 0.070 0.930 9 C 0.114 3.886 10 H 0.013 0.987 11 N -0.370 5.370 12 C -0.101 4.101 13 H 0.074 0.926 14 C -0.139 4.139 15 C -0.089 4.089 16 N -0.315 5.315 17 C -0.072 4.072 18 H 0.074 0.926 19 H 0.154 0.846 20 H 0.123 0.877 21 H 0.068 0.932 22 H 0.092 0.908 23 H 0.072 0.928 24 H 0.107 0.893 25 H 0.160 0.840 26 H 0.060 0.940 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.576 -7.291 0.556 8.626 hybrid contribution 1.407 1.995 -0.587 2.511 sum 5.982 -5.297 -0.031 7.990 Atomic orbital electron populations 1.69855 1.07069 1.27721 1.51423 1.25794 0.95702 1.02491 0.94429 0.85649 0.78369 0.79118 0.78676 1.19655 1.21042 1.19987 1.22250 0.93555 0.93193 1.51053 0.93046 1.18826 0.89725 0.90634 0.89464 0.98679 1.59441 1.18240 1.55012 1.04308 1.21878 0.96431 0.95618 0.96154 0.92565 1.22370 0.98302 0.94195 0.99034 1.23146 0.98336 0.94882 0.92485 1.63018 1.38143 1.03801 1.26488 1.22475 0.97079 0.93063 0.94616 0.92631 0.84619 0.87662 0.93217 0.90806 0.92785 0.89272 0.84042 0.94000 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.68 11.54 21.45 0.25 -52.43 15 2 C 0.02 0.84 5.38 84.65 0.46 1.29 15 3 Si 0.96 43.46 29.54 68.60 2.03 45.48 15 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 6 H -0.27 -12.28 7.11 99.48 0.71 -11.58 15 7 C -0.56 -30.51 7.84 25.60 0.20 -30.31 15 8 H 0.05 2.75 7.56 -2.91 -0.02 2.72 15 9 C 0.22 11.44 2.00 44.17 0.09 11.53 15 10 H 0.00 -0.29 8.14 -2.39 -0.02 -0.30 15 11 N -0.84 -41.26 8.86 -171.79 -1.52 -42.78 15 12 C -0.08 -3.39 2.68 -9.92 -0.03 -3.41 15 13 H 0.06 2.31 8.14 -2.39 -0.02 2.29 15 14 C -0.10 -3.65 6.31 31.89 0.20 -3.45 15 15 C 0.04 1.18 7.56 86.74 0.66 1.83 15 16 N -0.68 -22.51 7.51 -501.72 -3.77 -26.28 15 17 C 0.06 2.22 6.67 86.45 0.58 2.80 15 18 H 0.26 14.47 8.31 -92.71 -0.77 13.70 15 19 H 0.34 18.14 7.08 -89.69 -0.63 17.50 15 20 H 0.31 14.56 8.99 -89.70 -0.81 13.75 15 21 H 0.05 2.03 7.86 -2.39 -0.02 2.01 15 22 H 0.07 2.43 8.14 -2.39 -0.02 2.41 15 23 H 0.05 1.36 8.14 -2.39 -0.02 1.34 15 24 H 0.09 2.31 8.14 -2.38 -0.02 2.29 15 25 H 0.34 9.10 8.92 -89.69 -0.80 8.30 15 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 15 27 H 0.06 2.58 7.20 -2.39 -0.02 2.56 15 Total: -1.00 -58.67 221.97 -1.93 -60.60 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: -1.07 Total: 35.12 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 2.15 Total: -19.72 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -5.04 Total: -121.49 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -58.67 -1.93 -60.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104636334.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.183 kcal (2) G-P(sol) polarization free energy of solvation -58.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds