Wall clock time and date at job start Mon Mar 30 2020 01:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48498 * 109.46911 * 269.99812 * 3 2 1 5 5 H 1.48494 * 109.46946 * 29.99993 * 3 2 1 6 6 H 1.48507 * 109.47067 * 149.99945 * 3 2 1 7 7 C 1.37880 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00131 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99874 * 180.02562 * 7 2 1 10 10 H 1.09006 * 109.47477 * 60.00198 * 9 7 2 11 11 N 1.46900 * 109.47257 * 299.99897 * 9 7 2 12 12 C 1.52999 * 109.47344 * 179.97438 * 9 7 2 13 13 H 1.09001 * 110.90840 * 302.59080 * 12 9 7 14 14 C 1.55138 * 110.99653 * 178.71937 * 12 9 7 15 15 C 1.54320 * 103.02210 * 206.25748 * 14 12 9 16 16 N 1.47437 * 107.23257 * 22.28526 * 15 14 12 17 17 C 1.47846 * 108.56923 * 0.98995 * 16 15 14 18 18 H 0.96998 * 120.00445 * 359.97438 * 1 2 3 19 19 H 1.00903 * 110.99609 * 176.05030 * 11 9 7 20 20 H 1.00900 * 110.99756 * 299.99732 * 11 9 7 21 21 H 1.09000 * 110.70480 * 87.87387 * 14 12 9 22 22 H 1.08999 * 110.85101 * 324.71206 * 14 12 9 23 23 H 1.08998 * 109.88703 * 262.87492 * 15 14 12 24 24 H 1.08999 * 109.88555 * 141.69210 * 15 14 12 25 25 H 1.00906 * 110.99932 * 238.72043 * 16 15 14 26 26 H 1.08995 * 110.38030 * 94.73340 * 17 16 15 27 27 H 1.09000 * 110.37255 * 217.07995 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8745 -0.6808 0.8906 11 7 4.0016 -0.5008 -1.1987 12 6 4.0216 -2.6365 -0.0001 13 1 3.6338 -3.1863 0.8576 14 6 5.5721 -2.6778 -0.0319 15 6 5.8701 -4.0398 -0.6935 16 7 4.6724 -4.4229 -1.4632 17 6 3.6623 -3.3520 -1.3263 18 1 -0.4851 0.8400 0.0004 19 1 5.0082 -0.4308 -1.1897 20 1 3.6785 -0.9578 -2.0382 21 1 5.9793 -2.6429 0.9786 22 1 5.9697 -1.8613 -0.6346 23 1 6.0734 -4.7877 0.0729 24 1 6.7266 -3.9479 -1.3615 25 1 4.3064 -5.3080 -1.1457 26 1 3.7305 -2.6567 -2.1630 27 1 2.6615 -3.7796 -1.2677 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104636343.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:39 Heat of formation + Delta-G solvation = -25.963260 kcal Electronic energy + Delta-G solvation = -10238.012856 eV Core-core repulsion = 8415.186936 eV Total energy + Delta-G solvation = -1822.825920 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.97862 -36.05070 -33.87769 -30.50085 -29.65482 -28.02411 -23.97066 -22.16018 -20.35911 -18.82562 -17.57741 -16.72810 -16.45296 -15.88822 -15.01731 -14.48858 -14.32649 -13.65537 -13.46208 -13.30475 -12.68805 -12.27460 -12.25646 -11.71505 -11.61284 -11.49359 -11.02636 -10.73250 -9.49402 -9.17981 -8.22750 -6.34614 1.50833 1.57847 1.71418 2.54067 3.12563 3.34646 3.82685 3.91586 4.14823 4.20808 4.43338 4.57896 4.71067 4.86737 4.96466 5.02898 5.12495 5.29675 5.42492 5.67844 5.88845 6.15360 6.48114 6.52544 6.80607 7.03551 7.43071 8.90380 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.075990 B = 0.015383 C = 0.013851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.380712 B = 1819.706114 C = 2021.009912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.021 3.979 3 Si 1.002 2.998 4 H -0.279 1.279 5 H -0.327 1.327 6 H -0.261 1.261 7 C -0.516 4.516 8 H 0.033 0.967 9 C 0.200 3.800 10 H 0.031 0.969 11 N -0.846 5.846 12 C -0.133 4.133 13 H 0.055 0.945 14 C -0.138 4.138 15 C 0.050 3.950 16 N -0.691 5.691 17 C 0.065 3.935 18 H 0.263 0.737 19 H 0.330 0.670 20 H 0.338 0.662 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.341 0.659 26 H 0.070 0.930 27 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.363 -5.047 -0.973 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.177 4.177 3 Si 0.833 3.167 4 H -0.205 1.205 5 H -0.258 1.258 6 H -0.186 1.186 7 C -0.554 4.554 8 H 0.051 0.949 9 C 0.089 3.911 10 H 0.049 0.951 11 N -0.380 5.380 12 C -0.156 4.156 13 H 0.074 0.926 14 C -0.176 4.176 15 C -0.079 4.079 16 N -0.319 5.319 17 C -0.065 4.065 18 H 0.071 0.929 19 H 0.145 0.855 20 H 0.154 0.846 21 H 0.096 0.904 22 H 0.092 0.908 23 H 0.083 0.917 24 H 0.100 0.900 25 H 0.157 0.843 26 H 0.088 0.912 27 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.081 -4.146 -1.369 12.846 hybrid contribution -0.242 -0.301 0.791 0.880 sum 11.839 -4.447 -0.578 12.660 Atomic orbital electron populations 1.70096 1.08554 1.28001 1.52550 1.25902 0.95175 1.03751 0.92877 0.84811 0.77367 0.76665 0.77893 1.20509 1.25768 1.18618 1.21181 0.90937 0.92596 1.50704 0.94910 1.19135 0.92937 0.89005 0.89985 0.95082 1.59108 1.14461 1.58619 1.05843 1.23204 0.95477 0.98928 0.97945 0.92600 1.22880 0.94653 0.98552 1.01544 1.22649 0.93766 0.95674 0.95800 1.61804 1.06733 1.05373 1.57989 1.22653 0.93892 0.93403 0.96522 0.92892 0.85549 0.84633 0.90382 0.90772 0.91699 0.90050 0.84310 0.91199 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.40 13.96 21.45 0.30 -60.10 15 2 C 0.02 1.25 5.47 84.66 0.46 1.71 15 3 Si 1.00 49.79 26.03 68.60 1.79 51.58 15 4 H -0.28 -13.67 7.11 99.48 0.71 -12.96 15 5 H -0.33 -16.48 7.11 99.48 0.71 -15.77 15 6 H -0.26 -12.24 6.54 99.48 0.65 -11.59 15 7 C -0.52 -28.89 8.89 25.60 0.23 -28.66 15 8 H 0.03 2.02 7.94 -2.91 -0.02 2.00 15 9 C 0.20 8.85 2.08 44.17 0.09 8.94 15 10 H 0.03 1.45 7.20 -2.38 -0.02 1.43 15 11 N -0.85 -33.64 6.60 -171.80 -1.13 -34.77 15 12 C -0.13 -4.87 2.87 -9.41 -0.03 -4.90 15 13 H 0.06 2.17 8.14 -2.39 -0.02 2.16 15 14 C -0.14 -3.84 6.34 31.78 0.20 -3.64 15 15 C 0.05 1.23 7.58 86.65 0.66 1.88 15 16 N -0.69 -19.69 7.39 -504.43 -3.73 -23.42 15 17 C 0.06 2.28 6.49 86.78 0.56 2.84 15 18 H 0.26 15.77 8.31 -92.71 -0.77 15.00 15 19 H 0.33 10.90 7.11 -89.69 -0.64 10.26 15 20 H 0.34 13.27 6.72 -89.69 -0.60 12.67 15 21 H 0.08 1.98 8.14 -2.39 -0.02 1.96 15 22 H 0.07 1.99 6.14 -2.39 -0.01 1.97 15 23 H 0.06 1.36 8.14 -2.39 -0.02 1.34 15 24 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.34 8.69 8.91 -89.69 -0.80 7.89 15 26 H 0.07 2.55 5.83 -2.39 -0.01 2.53 15 27 H 0.05 1.84 8.14 -2.39 -0.02 1.82 15 Total: -1.00 -64.52 213.32 -1.51 -66.03 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.91 Total: 22.50 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 2.18 Total: -21.82 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -4.56 Total: -118.29 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 1.79 Total: 51.58 kcal Total: -64.52 -1.51 -66.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104636343.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.067 kcal (2) G-P(sol) polarization free energy of solvation -64.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds