Wall clock time and date at job start Mon Mar 30 2020 01:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99876 * 2 1 4 4 H 1.48496 * 109.46696 * 239.99491 * 3 2 1 5 5 H 1.48497 * 109.47058 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47012 * 119.99634 * 3 2 1 7 7 C 1.37877 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99951 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99943 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.47266 * 59.99817 * 9 7 2 11 11 N 1.46905 * 109.46984 * 300.00325 * 9 7 2 12 12 C 1.52998 * 109.47178 * 179.97438 * 9 7 2 13 13 H 1.09006 * 110.87112 * 62.39418 * 12 9 7 14 14 C 1.55138 * 111.02228 * 186.25749 * 12 9 7 15 15 C 1.54318 * 103.01792 * 153.76039 * 14 12 9 16 16 N 1.47446 * 107.23303 * 337.71992 * 15 14 12 17 17 C 1.47840 * 108.56768 * 359.00691 * 16 15 14 18 18 H 0.97000 * 119.99788 * 0.02562 * 1 2 3 19 19 H 1.00897 * 110.99290 * 299.99510 * 11 9 7 20 20 H 1.00899 * 111.00106 * 63.95155 * 11 9 7 21 21 H 1.09003 * 110.70420 * 35.38418 * 14 12 9 22 22 H 1.09002 * 110.71153 * 272.14407 * 14 12 9 23 23 H 1.08996 * 109.89415 * 218.31078 * 15 14 12 24 24 H 1.09001 * 109.88767 * 97.12302 * 15 14 12 25 25 H 1.00898 * 110.99657 * 236.73552 * 16 15 14 26 26 H 1.08998 * 110.37675 * 142.92257 * 17 16 15 27 27 H 1.08996 * 110.37806 * 265.27089 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 0.4060 -2.5767 1.1997 12 6 2.2454 -3.6620 0.0005 13 1 2.8565 -3.6505 0.9031 14 6 1.5129 -5.0205 -0.1573 15 6 2.5874 -5.9221 -0.8007 16 7 3.5653 -5.0354 -1.4577 17 6 3.1313 -3.6347 -1.2699 18 1 -0.4850 0.8401 -0.0004 19 1 0.9638 -2.5251 2.0389 20 1 -0.3013 -1.8572 1.1907 21 1 0.6503 -4.9190 -0.8159 22 1 1.2130 -5.4120 0.8148 23 1 2.1272 -6.5783 -1.5393 24 1 3.0826 -6.5152 -0.0319 25 1 3.6541 -5.2582 -2.4377 26 1 3.9946 -2.9872 -1.1165 27 1 2.5516 -3.2985 -2.1295 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104636346.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:40 Heat of formation + Delta-G solvation = -13.591983 kcal Electronic energy + Delta-G solvation = -10120.641265 eV Core-core repulsion = 8298.351804 eV Total energy + Delta-G solvation = -1822.289461 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.98032 -34.32395 -31.35978 -28.83356 -28.28274 -25.44764 -21.82976 -20.59142 -19.09354 -16.46113 -15.79304 -14.98755 -14.51956 -13.64789 -13.01045 -12.77173 -12.54853 -11.89681 -11.32229 -11.08805 -11.00848 -10.72135 -10.57150 -10.28381 -9.94249 -9.57079 -9.26929 -8.55828 -7.94707 -7.12754 -6.02933 -4.18859 3.26019 3.31196 3.34098 4.35842 4.82996 5.19214 5.38949 5.56270 5.69787 6.01800 6.09950 6.37857 6.54358 6.58301 6.69773 6.91357 6.97853 7.06032 7.40398 7.74069 7.80110 7.84311 8.21257 8.76585 9.01923 9.19746 9.53205 10.94743 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.069099 B = 0.014209 C = 0.012403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.119787 B = 1970.161503 C = 2256.975632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.221 3.779 10 H 0.033 0.967 11 N -0.853 5.853 12 C -0.075 4.075 13 H 0.064 0.936 14 C -0.127 4.127 15 C 0.043 3.957 16 N -0.693 5.693 17 C 0.060 3.940 18 H 0.264 0.736 19 H 0.309 0.691 20 H 0.352 0.648 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.040 0.960 24 H 0.064 0.936 25 H 0.328 0.672 26 H 0.074 0.926 27 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.966 -5.874 -1.229 6.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.587 4.587 8 H 0.073 0.927 9 C 0.110 3.890 10 H 0.051 0.949 11 N -0.381 5.381 12 C -0.094 4.094 13 H 0.082 0.918 14 C -0.165 4.165 15 C -0.086 4.086 16 N -0.321 5.321 17 C -0.069 4.069 18 H 0.074 0.926 19 H 0.118 0.882 20 H 0.167 0.833 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.058 0.942 24 H 0.083 0.917 25 H 0.142 0.858 26 H 0.092 0.908 27 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.054 -6.487 -0.984 7.237 hybrid contribution 0.097 2.063 -0.484 2.121 sum 3.151 -4.424 -1.468 5.627 Atomic orbital electron populations 1.69739 1.05867 1.27050 1.50946 1.25039 0.94886 0.99276 0.94625 0.86643 0.79606 0.82986 0.78669 1.20245 1.21312 1.20293 1.21978 0.93637 0.91941 1.51139 0.92711 1.18859 0.89638 0.89551 0.90928 0.94880 1.59461 1.18596 1.55815 1.04223 1.22239 0.96256 0.94583 0.96365 0.91789 1.22710 0.97175 0.96071 1.00564 1.22630 0.92534 0.95521 0.97920 1.61948 1.48278 1.04201 1.17711 1.22738 0.98233 0.87862 0.98052 0.92613 0.88229 0.83260 0.92071 0.91390 0.94181 0.91741 0.85768 0.90814 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.11 11.54 55.43 0.64 -24.47 15 2 C 0.06 1.73 5.38 -17.82 -0.10 1.64 15 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.55 -14.71 8.22 -34.44 -0.28 -14.99 15 8 H 0.05 1.47 7.31 -52.49 -0.38 1.08 15 9 C 0.22 5.48 2.24 -68.86 -0.15 5.33 15 10 H 0.03 0.92 8.11 -51.93 -0.42 0.50 15 11 N -0.85 -20.53 9.01 -5.65 -0.05 -20.58 15 12 C -0.07 -1.58 2.70 -88.48 -0.24 -1.82 15 13 H 0.06 1.41 8.14 -51.93 -0.42 0.98 15 14 C -0.13 -2.34 6.24 -24.91 -0.16 -2.50 15 15 C 0.04 0.69 7.58 -2.83 -0.02 0.67 15 16 N -0.69 -11.79 7.39 -110.80 -0.82 -12.61 15 17 C 0.06 1.18 6.36 -2.30 -0.01 1.17 15 18 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 19 H 0.31 7.19 8.99 -39.29 -0.35 6.83 15 20 H 0.35 9.14 7.08 -39.29 -0.28 8.86 15 21 H 0.06 1.17 8.02 -51.93 -0.42 0.76 15 22 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 15 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.33 4.83 8.91 -39.29 -0.35 4.48 15 26 H 0.07 1.50 7.86 -51.93 -0.41 1.09 15 27 H 0.04 0.85 8.04 -51.93 -0.42 0.43 15 LS Contribution 222.71 15.07 3.36 3.36 Total: -1.00 -27.31 222.71 -6.71 -34.03 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -3.85 Total: 14.67 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -0.96 Total: -10.51 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.23 Total: -57.67 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -27.31 -6.71 -34.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104636346.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.433 kcal (2) G-P(sol) polarization free energy of solvation -27.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds