Wall clock time and date at job start Mon Mar 30 2020 01:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99876 * 2 1 4 4 H 1.48496 * 109.46696 * 239.99491 * 3 2 1 5 5 H 1.48497 * 109.47058 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47012 * 119.99634 * 3 2 1 7 7 C 1.37877 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99951 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99943 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.47266 * 59.99817 * 9 7 2 11 11 N 1.46905 * 109.46984 * 300.00325 * 9 7 2 12 12 C 1.52998 * 109.47178 * 179.97438 * 9 7 2 13 13 H 1.09006 * 110.87112 * 62.39418 * 12 9 7 14 14 C 1.55138 * 111.02228 * 186.25749 * 12 9 7 15 15 C 1.54318 * 103.01792 * 153.76039 * 14 12 9 16 16 N 1.47446 * 107.23303 * 337.71992 * 15 14 12 17 17 C 1.47840 * 108.56768 * 359.00691 * 16 15 14 18 18 H 0.97000 * 119.99788 * 0.02562 * 1 2 3 19 19 H 1.00897 * 110.99290 * 299.99510 * 11 9 7 20 20 H 1.00899 * 111.00106 * 63.95155 * 11 9 7 21 21 H 1.09003 * 110.70420 * 35.38418 * 14 12 9 22 22 H 1.09002 * 110.71153 * 272.14407 * 14 12 9 23 23 H 1.08996 * 109.89415 * 218.31078 * 15 14 12 24 24 H 1.09001 * 109.88767 * 97.12302 * 15 14 12 25 25 H 1.00898 * 110.99657 * 236.73552 * 16 15 14 26 26 H 1.08998 * 110.37675 * 142.92257 * 17 16 15 27 27 H 1.08996 * 110.37806 * 265.27089 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 0.4060 -2.5767 1.1997 12 6 2.2454 -3.6620 0.0005 13 1 2.8565 -3.6505 0.9031 14 6 1.5129 -5.0205 -0.1573 15 6 2.5874 -5.9221 -0.8007 16 7 3.5653 -5.0354 -1.4577 17 6 3.1313 -3.6347 -1.2699 18 1 -0.4850 0.8401 -0.0004 19 1 0.9638 -2.5251 2.0389 20 1 -0.3013 -1.8572 1.1907 21 1 0.6503 -4.9190 -0.8159 22 1 1.2130 -5.4120 0.8148 23 1 2.1272 -6.5783 -1.5393 24 1 3.0826 -6.5152 -0.0319 25 1 3.6541 -5.2582 -2.4377 26 1 3.9946 -2.9872 -1.1165 27 1 2.5516 -3.2985 -2.1295 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104636346.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:40 Heat of formation + Delta-G solvation = -34.811451 kcal Electronic energy + Delta-G solvation = -10121.561410 eV Core-core repulsion = 8298.351804 eV Total energy + Delta-G solvation = -1823.209606 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.55243 -36.22033 -33.34615 -30.41344 -29.91128 -27.44910 -23.68123 -22.02222 -20.84444 -18.51679 -17.36798 -16.61340 -16.38631 -15.50419 -14.77124 -14.49422 -14.11884 -13.58658 -13.16186 -12.91632 -12.68863 -12.45025 -12.36709 -12.07245 -11.59358 -11.35833 -11.13576 -10.64393 -9.33788 -9.15522 -8.09321 -6.33606 1.38651 1.39157 1.47123 2.37804 3.07876 3.43345 3.96515 3.97443 4.25675 4.47156 4.63940 4.79419 4.84528 5.03112 5.06159 5.19389 5.34325 5.38090 5.67622 5.75947 5.95718 6.15885 6.56475 6.70909 6.98020 7.15017 7.42723 8.85460 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.069099 B = 0.014209 C = 0.012403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.119787 B = 1970.161503 C = 2256.975632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.561 4.561 8 H 0.051 0.949 9 C 0.223 3.777 10 H -0.002 1.002 11 N -0.843 5.843 12 C -0.075 4.075 13 H 0.057 0.943 14 C -0.121 4.121 15 C 0.048 3.952 16 N -0.690 5.690 17 C 0.067 3.933 18 H 0.265 0.735 19 H 0.315 0.685 20 H 0.341 0.659 21 H 0.050 0.950 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.344 0.656 26 H 0.064 0.936 27 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.841 -6.438 -1.296 7.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.601 4.601 8 H 0.070 0.930 9 C 0.113 3.887 10 H 0.016 0.984 11 N -0.370 5.370 12 C -0.095 4.095 13 H 0.075 0.925 14 C -0.160 4.160 15 C -0.081 4.081 16 N -0.320 5.320 17 C -0.062 4.062 18 H 0.074 0.926 19 H 0.124 0.876 20 H 0.155 0.845 21 H 0.068 0.932 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.160 0.840 26 H 0.083 0.917 27 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.943 -7.075 -1.055 8.168 hybrid contribution -0.199 2.213 -0.466 2.270 sum 3.744 -4.862 -1.521 6.322 Atomic orbital electron populations 1.69848 1.07008 1.27762 1.51419 1.25770 0.95694 1.02423 0.94352 0.85661 0.78388 0.79146 0.78710 1.19916 1.20986 1.19796 1.22245 0.93620 0.93113 1.51139 0.93044 1.18762 0.89624 0.90647 0.89708 0.98354 1.59436 1.18245 1.55034 1.04312 1.22110 0.95842 0.94763 0.96815 0.92489 1.22642 0.97375 0.94989 1.00972 1.22656 0.91595 0.95050 0.98770 1.61891 1.48298 1.02639 1.19176 1.22539 0.97303 0.89556 0.96806 0.92589 0.87607 0.84521 0.93161 0.90863 0.91537 0.90373 0.83998 0.91749 0.95166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.83 11.54 21.45 0.25 -51.58 15 2 C 0.02 0.93 5.38 84.65 0.46 1.39 15 3 Si 0.96 43.16 29.54 68.60 2.03 45.19 15 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 7 C -0.56 -30.29 8.22 25.60 0.21 -30.08 15 8 H 0.05 2.76 7.31 -2.91 -0.02 2.73 15 9 C 0.22 11.20 2.24 44.17 0.10 11.30 15 10 H 0.00 -0.09 8.11 -2.38 -0.02 -0.11 15 11 N -0.84 -40.80 9.01 -171.79 -1.55 -42.35 15 12 C -0.08 -3.16 2.70 -9.41 -0.03 -3.19 15 13 H 0.06 2.46 8.14 -2.38 -0.02 2.44 15 14 C -0.12 -4.31 6.24 31.77 0.20 -4.11 15 15 C 0.05 1.40 7.58 86.65 0.66 2.06 15 16 N -0.69 -21.83 7.39 -504.45 -3.73 -25.56 15 17 C 0.07 2.61 6.36 86.77 0.55 3.16 15 18 H 0.26 14.27 8.31 -92.71 -0.77 13.50 15 19 H 0.32 14.59 8.99 -89.70 -0.81 13.78 15 20 H 0.34 17.91 7.08 -89.69 -0.63 17.27 15 21 H 0.05 1.88 8.02 -2.39 -0.02 1.86 15 22 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 23 H 0.07 1.62 8.14 -2.39 -0.02 1.60 15 24 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 25 H 0.34 9.17 8.91 -89.70 -0.80 8.37 15 26 H 0.06 2.59 7.86 -2.39 -0.02 2.57 15 27 H 0.03 1.22 8.04 -2.39 -0.02 1.20 15 Total: -1.00 -56.77 222.71 -1.92 -58.69 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -1.07 Total: 35.08 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 2.15 Total: -19.48 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -5.03 Total: -119.49 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -56.77 -1.92 -58.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104636346.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.883 kcal (2) G-P(sol) polarization free energy of solvation -56.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds