Wall clock time and date at job start Mon Mar 30 2020 02:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00445 * 2 1 4 4 H 1.48502 * 109.47196 * 270.00204 * 3 2 1 5 5 H 1.48508 * 109.46895 * 29.99996 * 3 2 1 6 6 H 1.48500 * 109.47049 * 149.99583 * 3 2 1 7 7 C 1.37886 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99435 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99708 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.46610 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.50973 * 305.08847 * 10 9 7 12 12 C 1.53100 * 109.50413 * 184.99839 * 10 9 7 13 13 N 1.47013 * 109.25804 * 183.21736 * 12 10 9 14 14 C 1.47010 * 110.75208 * 58.61767 * 13 12 10 15 15 C 1.53097 * 109.25750 * 301.38308 * 14 13 12 16 16 O 1.43013 * 109.25912 * 56.85032 * 15 14 13 17 17 H 0.97002 * 119.99949 * 0.02562 * 1 2 3 18 18 H 1.08992 * 109.47201 * 60.00509 * 9 7 2 19 19 H 1.08997 * 109.47016 * 300.00106 * 9 7 2 20 20 H 1.08995 * 109.51218 * 303.15488 * 12 10 9 21 21 H 1.09002 * 109.50492 * 63.24146 * 12 10 9 22 22 H 1.00905 * 110.99468 * 294.84225 * 13 12 10 23 23 H 1.08998 * 109.50973 * 61.32128 * 14 13 12 24 24 H 1.09002 * 109.50690 * 181.45201 * 14 13 12 25 25 H 1.09008 * 109.50749 * 176.78370 * 15 14 13 26 26 H 1.08995 * 109.51089 * 296.86688 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0010 11 1 3.5856 -3.1769 0.8414 12 6 5.5472 -2.6396 0.1273 13 7 6.0376 -4.0233 0.0491 14 6 5.6357 -4.6474 -1.2198 15 6 4.1091 -4.6244 -1.3326 16 8 3.6483 -3.2750 -1.2232 17 1 -0.4850 0.8401 -0.0004 18 1 3.8744 -0.6802 0.8911 19 1 3.8751 -0.6805 -0.8888 20 1 5.9806 -2.0535 -0.6830 21 1 5.8339 -2.2047 1.0848 22 1 5.7161 -4.5659 0.8368 23 1 6.0706 -4.0935 -2.0517 24 1 5.9871 -5.6790 -1.2454 25 1 3.8092 -5.0344 -2.2971 26 1 3.6758 -5.2238 -0.5319 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104690426.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:28 Heat of formation + Delta-G solvation = -76.100301 kcal Electronic energy + Delta-G solvation = -10176.372209 eV Core-core repulsion = 8253.653522 eV Total energy + Delta-G solvation = -1922.718687 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.47096 -35.58059 -35.20936 -33.39892 -30.04378 -26.95752 -24.92440 -22.84436 -21.83936 -18.94499 -17.31489 -17.27539 -16.46762 -16.14625 -15.72121 -15.19943 -14.56588 -13.86708 -13.69191 -13.35922 -12.72627 -12.44560 -12.24395 -12.03062 -11.81828 -11.78139 -11.49747 -10.95776 -10.77203 -9.17073 -8.28892 -6.32795 1.36217 1.38586 1.49991 2.36321 2.91507 3.11684 3.26404 3.85019 4.09244 4.14542 4.26754 4.33005 4.54067 4.73280 4.78629 4.92877 5.00531 5.18229 5.32684 5.60766 5.82766 6.23391 6.35705 6.45697 6.73801 7.29557 8.88691 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.078094 B = 0.013110 C = 0.011845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.454430 B = 2135.258292 C = 2363.269368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.002 4.002 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.238 1.238 7 C -0.522 4.522 8 H 0.022 0.978 9 C -0.004 4.004 10 C 0.071 3.929 11 H 0.038 0.962 12 C 0.033 3.967 13 N -0.682 5.682 14 C 0.027 3.973 15 C 0.010 3.990 16 O -0.401 6.401 17 H 0.266 0.734 18 H 0.048 0.952 19 H 0.021 0.979 20 H 0.077 0.923 21 H 0.099 0.901 22 H 0.347 0.653 23 H 0.077 0.923 24 H 0.113 0.887 25 H 0.105 0.895 26 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.759 -6.064 -0.186 14.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.198 4.198 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.161 1.161 7 C -0.560 4.560 8 H 0.040 0.960 9 C -0.042 4.042 10 C 0.012 3.988 11 H 0.056 0.944 12 C -0.097 4.097 13 N -0.310 5.310 14 C -0.102 4.102 15 C -0.068 4.068 16 O -0.320 6.320 17 H 0.075 0.925 18 H 0.066 0.934 19 H 0.040 0.960 20 H 0.095 0.905 21 H 0.117 0.883 22 H 0.165 0.835 23 H 0.095 0.905 24 H 0.131 0.869 25 H 0.123 0.877 26 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.170 -5.702 -0.547 14.362 hybrid contribution -1.397 0.324 0.215 1.451 sum 11.773 -5.378 -0.332 12.947 Atomic orbital electron populations 1.70084 1.08470 1.28169 1.52907 1.26102 0.95736 1.03764 0.94155 0.85580 0.79714 0.77717 0.79151 1.19537 1.20766 1.16101 1.21314 0.91891 0.92806 1.50030 0.95961 1.19548 0.94480 0.92679 0.97507 1.22713 0.95461 0.94799 0.85859 0.94396 1.22653 0.91602 0.91376 1.04020 1.60973 1.61960 1.02957 1.05126 1.22683 0.92711 1.01867 0.92962 1.23482 0.96625 0.83681 1.03056 1.88169 1.77664 1.26821 1.39353 0.92514 0.93395 0.96032 0.90472 0.88279 0.83519 0.90466 0.86917 0.87688 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.98 13.96 21.45 0.30 -61.68 15 2 C 0.00 -0.10 5.47 84.66 0.46 0.36 15 3 Si 0.96 44.96 27.47 68.60 1.88 46.84 15 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 15 5 H -0.28 -12.91 7.11 99.48 0.71 -12.21 15 6 H -0.24 -10.04 6.54 99.48 0.65 -9.39 15 7 C -0.52 -31.60 9.44 25.60 0.24 -31.36 15 8 H 0.02 1.51 7.99 -2.91 -0.02 1.49 15 9 C 0.00 -0.21 3.76 29.85 0.11 -0.10 15 10 C 0.07 2.90 2.75 30.63 0.08 2.98 15 11 H 0.04 1.61 8.14 -2.39 -0.02 1.59 15 12 C 0.03 1.04 6.05 86.32 0.52 1.56 15 13 N -0.68 -17.77 6.93 -513.00 -3.55 -21.32 15 14 C 0.03 0.67 6.76 86.31 0.58 1.25 15 15 C 0.01 0.30 7.00 72.01 0.50 0.80 15 16 O -0.40 -17.32 10.23 -148.98 -1.52 -18.84 15 17 H 0.27 16.00 8.31 -92.71 -0.77 15.23 15 18 H 0.05 2.15 7.20 -2.39 -0.02 2.13 15 19 H 0.02 1.03 7.57 -2.39 -0.02 1.01 15 20 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 21 H 0.10 2.73 8.14 -2.39 -0.02 2.71 15 22 H 0.35 8.04 8.89 -89.69 -0.80 7.24 15 23 H 0.08 1.95 8.14 -2.39 -0.02 1.93 15 24 H 0.11 2.00 8.14 -2.39 -0.02 1.98 15 25 H 0.11 2.81 8.14 -2.38 -0.02 2.79 15 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 15 Total: -1.00 -70.81 217.51 -0.08 -70.89 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.30 Total: 8.61 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 2.51 Total: -24.50 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -3.25 Total: -83.00 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -1.52 Total: -18.84 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Total: -70.81 -0.08 -70.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104690426.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.209 kcal (2) G-P(sol) polarization free energy of solvation -70.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds