Wall clock time and date at job start Mon Mar 30 2020 02:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.09006 * 109.50003 * 55.00511 * 10 9 7 12 12 C 1.53096 * 109.50835 * 175.08745 * 10 9 7 13 13 N 1.47022 * 109.25616 * 176.74360 * 12 10 9 14 14 C 1.47013 * 110.78629 * 301.45275 * 13 12 10 15 15 C 1.53099 * 109.25952 * 58.59027 * 14 13 12 16 16 O 1.43009 * 109.25951 * 303.15107 * 15 14 13 17 17 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 19 19 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 20 20 H 1.08997 * 109.50819 * 296.72595 * 12 10 9 21 21 H 1.09008 * 109.50297 * 56.85157 * 12 10 9 22 22 H 1.00899 * 110.99837 * 177.65723 * 13 12 10 23 23 H 1.09004 * 109.50499 * 298.65527 * 14 13 12 24 24 H 1.08999 * 109.54119 * 178.54871 * 14 13 12 25 25 H 1.08996 * 109.50437 * 183.21171 * 15 14 13 26 26 H 1.08999 * 109.50402 * 63.08694 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 1 2.9299 -3.5518 0.8516 12 6 1.4849 -4.9843 0.1400 13 7 2.4381 -6.1012 0.0658 14 6 3.1822 -6.0687 -1.2017 15 6 3.9258 -4.7353 -1.3168 16 8 2.9873 -3.6613 -1.2122 17 1 -0.4850 0.8400 0.0004 18 1 0.6245 -2.5529 0.8956 19 1 0.6244 -2.5609 -0.8844 20 1 0.9641 -5.0124 1.0971 21 1 0.7617 -5.0692 -0.6713 22 1 1.9685 -6.9860 0.1867 23 1 2.4867 -6.1706 -2.0348 24 1 3.8999 -6.8888 -1.2243 25 1 4.4328 -4.6833 -2.2802 26 1 4.6592 -4.6573 -0.5142 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104690429.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:30 Heat of formation + Delta-G solvation = -53.136025 kcal Electronic energy + Delta-G solvation = -10126.947841 eV Core-core repulsion = 8205.224960 eV Total energy + Delta-G solvation = -1921.722882 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.72218 -34.10808 -33.26892 -31.27048 -27.91223 -25.47107 -23.42023 -21.30953 -19.69544 -16.30498 -16.22821 -15.55358 -14.52618 -14.36167 -13.97718 -13.67442 -13.25644 -12.04118 -11.92890 -11.30037 -11.17083 -10.74660 -10.58284 -10.51070 -10.04288 -9.29224 -9.20076 -8.84014 -8.30812 -8.18637 -5.93878 -3.93880 3.39906 3.42946 3.46958 4.40633 4.54308 4.57143 5.29982 5.41687 5.45609 5.58284 5.67489 5.83679 6.02201 6.10793 6.19521 6.57604 6.83018 7.17205 7.49644 7.53245 7.68733 8.03667 8.13842 8.48950 9.10150 9.68401 11.18030 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.084782 B = 0.012046 C = 0.010984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.180428 B = 2323.776638 C = 2548.546763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.506 4.506 8 H 0.057 0.943 9 C 0.028 3.972 10 C 0.100 3.900 11 H 0.053 0.947 12 C 0.023 3.977 13 N -0.691 5.691 14 C 0.021 3.979 15 C 0.058 3.942 16 O -0.365 6.365 17 H 0.260 0.740 18 H 0.033 0.967 19 H 0.024 0.976 20 H 0.081 0.919 21 H 0.036 0.964 22 H 0.336 0.664 23 H 0.034 0.966 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.420 -9.678 -0.989 10.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.545 4.545 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.042 3.958 11 H 0.071 0.929 12 C -0.106 4.106 13 N -0.322 5.322 14 C -0.109 4.109 15 C -0.020 4.020 16 O -0.284 6.284 17 H 0.070 0.930 18 H 0.051 0.949 19 H 0.042 0.958 20 H 0.099 0.901 21 H 0.054 0.946 22 H 0.153 0.847 23 H 0.053 0.947 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.728 -9.078 -0.780 10.265 hybrid contribution -0.242 0.292 -0.458 0.595 sum 4.486 -8.787 -1.238 9.943 Atomic orbital electron populations 1.69946 1.06032 1.26673 1.51414 1.25001 0.94857 0.99246 0.95532 0.86611 0.79509 0.82976 0.78621 1.20235 1.21389 1.20293 1.21097 0.93163 0.90482 1.49711 0.92440 1.19165 0.93111 0.90685 0.97943 1.22499 0.93654 0.93761 0.85842 0.92887 1.22798 0.94087 0.92370 1.01348 1.60602 1.30726 1.06208 1.34701 1.22601 0.97959 0.99514 0.90794 1.22531 0.92017 0.86190 1.01267 1.88173 1.53248 1.47072 1.39862 0.93012 0.94916 0.95771 0.90060 0.94594 0.84741 0.94727 0.90608 0.89514 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.29 55.43 0.74 -26.83 15 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 15 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 7 C -0.51 -14.89 8.88 -34.44 -0.31 -15.20 15 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 15 9 C 0.03 0.76 4.69 -27.88 -0.13 0.63 15 10 C 0.10 2.25 2.75 -26.68 -0.07 2.18 15 11 H 0.05 1.22 8.14 -51.93 -0.42 0.80 15 12 C 0.02 0.42 6.05 -3.71 -0.02 0.40 15 13 N -0.69 -10.81 6.92 -113.49 -0.79 -11.59 15 14 C 0.02 0.31 6.76 -3.71 -0.03 0.28 15 15 C 0.06 0.98 7.01 37.21 0.26 1.24 15 16 O -0.37 -8.24 10.23 -35.23 -0.36 -8.60 15 17 H 0.26 7.52 8.31 -40.82 -0.34 7.19 15 18 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 19 H 0.02 0.69 8.14 -51.93 -0.42 0.27 15 20 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 21 H 0.04 0.67 8.14 -51.92 -0.42 0.25 15 22 H 0.34 4.28 8.90 -39.29 -0.35 3.93 15 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 15 24 H 0.08 0.90 8.14 -51.93 -0.42 0.47 15 25 H 0.09 1.26 8.14 -51.93 -0.42 0.83 15 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 LS Contribution 221.12 15.07 3.33 3.33 Total: -1.00 -31.66 221.12 -6.19 -37.85 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -3.70 Total: -2.52 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.39 Total: -8.97 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.05 Total: -38.42 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -0.36 Total: -8.60 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -31.66 -6.19 -37.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104690429.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.284 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds