Wall clock time and date at job start Mon Mar 30 2020 02:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.09006 * 109.50003 * 55.00511 * 10 9 7 12 12 C 1.53096 * 109.50835 * 175.08745 * 10 9 7 13 13 N 1.47022 * 109.25616 * 176.74360 * 12 10 9 14 14 C 1.47013 * 110.78629 * 301.45275 * 13 12 10 15 15 C 1.53099 * 109.25952 * 58.59027 * 14 13 12 16 16 O 1.43009 * 109.25951 * 303.15107 * 15 14 13 17 17 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 19 19 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 20 20 H 1.08997 * 109.50819 * 296.72595 * 12 10 9 21 21 H 1.09008 * 109.50297 * 56.85157 * 12 10 9 22 22 H 1.00899 * 110.99837 * 177.65723 * 13 12 10 23 23 H 1.09004 * 109.50499 * 298.65527 * 14 13 12 24 24 H 1.08999 * 109.54119 * 178.54871 * 14 13 12 25 25 H 1.08996 * 109.50437 * 183.21171 * 15 14 13 26 26 H 1.08999 * 109.50402 * 63.08694 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 1 2.9299 -3.5518 0.8516 12 6 1.4849 -4.9843 0.1400 13 7 2.4381 -6.1012 0.0658 14 6 3.1822 -6.0687 -1.2017 15 6 3.9258 -4.7353 -1.3168 16 8 2.9873 -3.6613 -1.2122 17 1 -0.4850 0.8400 0.0004 18 1 0.6245 -2.5529 0.8956 19 1 0.6244 -2.5609 -0.8844 20 1 0.9641 -5.0124 1.0971 21 1 0.7617 -5.0692 -0.6713 22 1 1.9685 -6.9860 0.1867 23 1 2.4867 -6.1706 -2.0348 24 1 3.8999 -6.8888 -1.2243 25 1 4.4328 -4.6833 -2.2802 26 1 4.6592 -4.6573 -0.5142 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104690429.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:30 Heat of formation + Delta-G solvation = -77.493151 kcal Electronic energy + Delta-G solvation = -10128.004045 eV Core-core repulsion = 8205.224960 eV Total energy + Delta-G solvation = -1922.779086 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.25377 -35.65270 -35.26746 -33.11463 -29.67185 -27.18680 -25.13769 -23.07418 -21.25468 -18.46178 -17.68431 -17.20849 -16.52726 -15.71101 -15.48957 -15.20830 -14.77015 -14.09436 -13.63041 -13.39595 -12.70718 -12.57321 -12.38682 -12.21948 -11.77236 -11.41071 -11.08622 -10.57613 -10.46895 -9.50239 -8.19396 -6.28388 1.39944 1.43920 1.51812 2.42462 2.99383 3.17429 3.19824 4.00579 4.09684 4.22375 4.29504 4.35756 4.65977 4.76702 4.81407 4.97030 5.04735 5.37919 5.52314 5.77482 5.82255 6.19917 6.41649 6.53577 6.83464 7.38787 8.92661 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.084782 B = 0.012046 C = 0.010984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.180428 B = 2323.776638 C = 2548.546763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.032 3.968 10 C 0.107 3.893 11 H 0.044 0.956 12 C 0.034 3.966 13 N -0.690 5.690 14 C 0.024 3.976 15 C 0.047 3.953 16 O -0.401 6.401 17 H 0.264 0.736 18 H 0.019 0.981 19 H -0.006 1.006 20 H 0.090 0.910 21 H 0.029 0.971 22 H 0.357 0.643 23 H 0.035 0.965 24 H 0.114 0.886 25 H 0.111 0.889 26 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.610 -10.320 -1.071 11.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.071 0.929 9 C -0.005 4.005 10 C 0.050 3.950 11 H 0.062 0.938 12 C -0.096 4.096 13 N -0.323 5.323 14 C -0.105 4.105 15 C -0.030 4.030 16 O -0.320 6.320 17 H 0.073 0.927 18 H 0.037 0.963 19 H 0.012 0.988 20 H 0.109 0.891 21 H 0.048 0.952 22 H 0.176 0.824 23 H 0.053 0.947 24 H 0.132 0.868 25 H 0.129 0.871 26 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.926 -9.755 -0.859 11.446 hybrid contribution -0.583 0.441 -0.464 0.866 sum 5.342 -9.314 -1.323 10.819 Atomic orbital electron populations 1.70068 1.07632 1.27886 1.51893 1.25937 0.95829 1.03231 0.94801 0.85487 0.78294 0.78093 0.79078 1.19648 1.20450 1.19034 1.21444 0.93205 0.92049 1.50152 0.92890 1.19005 0.93542 0.92236 0.95718 1.22142 0.92884 0.94216 0.85804 0.93804 1.22524 0.93872 0.91548 1.01655 1.60530 1.30067 1.06278 1.35436 1.22644 0.98404 0.99249 0.90238 1.22894 0.91386 0.85977 1.02755 1.88087 1.54527 1.49916 1.39508 0.92680 0.96325 0.98757 0.89129 0.95246 0.82365 0.94678 0.86768 0.87057 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.04 13.29 21.45 0.28 -57.76 15 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 15 3 Si 0.97 45.89 29.54 68.60 2.03 47.92 15 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 15 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 15 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 7 C -0.53 -31.83 8.88 25.60 0.23 -31.60 15 8 H 0.05 3.14 7.74 -2.91 -0.02 3.12 15 9 C 0.03 1.79 4.69 29.85 0.14 1.93 15 10 C 0.11 4.86 2.75 30.63 0.08 4.95 15 11 H 0.04 2.04 8.14 -2.38 -0.02 2.02 15 12 C 0.03 1.21 6.05 86.31 0.52 1.73 15 13 N -0.69 -19.78 6.92 -512.96 -3.55 -23.34 15 14 C 0.02 0.63 6.76 86.31 0.58 1.21 15 15 C 0.05 1.50 7.01 72.02 0.50 2.00 15 16 O -0.40 -18.05 10.23 -148.98 -1.52 -19.57 15 17 H 0.26 15.39 8.31 -92.71 -0.77 14.62 15 18 H 0.02 1.06 8.14 -2.39 -0.02 1.04 15 19 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 15 20 H 0.09 3.05 8.14 -2.39 -0.02 3.03 15 21 H 0.03 1.09 8.14 -2.38 -0.02 1.07 15 22 H 0.36 7.93 8.90 -89.70 -0.80 7.13 15 23 H 0.03 0.94 8.14 -2.38 -0.02 0.92 15 24 H 0.11 2.18 8.14 -2.39 -0.02 2.16 15 25 H 0.11 2.96 8.14 -2.39 -0.02 2.94 15 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 15 Total: -1.00 -68.22 221.12 0.12 -68.10 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 0.35 Total: 3.99 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 2.52 Total: -19.34 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -3.27 Total: -81.09 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -1.52 Total: -19.57 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -68.22 0.12 -68.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104690429.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.392 kcal (2) G-P(sol) polarization free energy of solvation -68.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds