Wall clock time and date at job start Mon Mar 30 2020 01:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48501 * 109.47022 * 269.99514 * 3 2 1 5 5 H 1.48500 * 109.47226 * 29.99752 * 3 2 1 6 6 H 1.48503 * 109.47127 * 150.00168 * 3 2 1 7 7 C 1.37869 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99933 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00057 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.60309 * 59.99589 * 9 7 2 11 11 C 1.53020 * 109.60300 * 180.32405 * 9 7 2 12 12 N 1.46464 * 109.71893 * 168.96766 * 11 9 7 13 13 C 1.33875 * 122.60637 * 341.69594 * 12 11 9 14 14 O 1.21275 * 118.83463 * 181.86737 * 13 12 11 15 15 C 1.50347 * 122.33322 * 1.88960 * 13 12 11 16 16 O 1.42973 * 109.80774 * 344.07511 * 15 13 12 17 17 H 0.97004 * 119.99734 * 0.02562 * 1 2 3 18 18 H 1.08999 * 109.39532 * 289.21420 * 11 9 7 19 19 H 1.08995 * 109.39964 * 48.94394 * 11 9 7 20 20 H 0.96994 * 118.66771 * 161.66019 * 12 11 9 21 21 H 1.09001 * 109.41697 * 223.97738 * 15 13 12 22 22 H 1.08993 * 109.36023 * 104.14527 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6238 -2.5593 -0.8889 11 6 2.2426 -3.6644 0.0093 12 7 1.5309 -4.9170 0.2732 13 6 0.3065 -4.9510 0.8136 14 8 -0.2057 -6.0279 1.0343 15 6 -0.4562 -3.7015 1.1561 16 8 0.4318 -2.5810 1.1728 17 1 -0.4850 0.8401 -0.0004 18 1 2.7400 -3.7238 -0.9587 19 1 2.9874 -3.5002 0.7880 20 1 1.9640 -5.7549 0.0469 21 1 -0.9149 -3.8147 2.1384 22 1 -1.2335 -3.5367 0.4101 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107115531.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:05 Heat of formation + Delta-G solvation = -84.727380 kcal Electronic energy + Delta-G solvation = -10032.411859 eV Core-core repulsion = 7973.485979 eV Total energy + Delta-G solvation = -2058.925880 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.50971 -36.64874 -33.79633 -32.77294 -29.37568 -26.38013 -24.92466 -22.04073 -18.81322 -17.29691 -16.61137 -15.86082 -14.83576 -14.62665 -14.22212 -13.43574 -13.37564 -12.59825 -12.28346 -11.34771 -11.18457 -10.98941 -10.59726 -10.05485 -9.67238 -9.32584 -8.69313 -8.58159 -8.16206 -6.20642 -4.35355 3.11066 3.22266 3.29815 3.32475 3.83138 4.28344 4.89932 5.24642 5.48334 5.90132 6.06505 6.12199 6.19541 6.32280 7.08661 7.21546 7.64461 7.72157 8.01599 8.43754 8.66065 8.82112 9.36814 10.87760 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.100569 B = 0.013976 C = 0.012663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 278.350301 B = 2002.899057 C = 2210.567451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.071 0.929 9 C 0.202 3.798 10 H 0.027 0.973 11 C 0.082 3.918 12 N -0.721 5.721 13 C 0.492 3.508 14 O -0.577 6.577 15 C 0.044 3.956 16 O -0.351 6.351 17 H 0.265 0.735 18 H 0.073 0.927 19 H 0.066 0.934 20 H 0.387 0.613 21 H 0.108 0.892 22 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 -2.865 -0.665 4.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.128 4.128 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.570 4.570 8 H 0.089 0.911 9 C 0.146 3.854 10 H 0.045 0.955 11 C -0.041 4.041 12 N -0.372 5.372 13 C 0.280 3.720 14 O -0.459 6.459 15 C -0.036 4.036 16 O -0.269 6.269 17 H 0.075 0.925 18 H 0.091 0.909 19 H 0.084 0.916 20 H 0.221 0.779 21 H 0.126 0.874 22 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.263 -2.937 -0.344 3.724 hybrid contribution 0.639 0.363 -0.320 0.801 sum 2.902 -2.574 -0.664 3.935 Atomic orbital electron populations 1.70015 1.06220 1.27168 1.45914 1.25067 0.94858 0.99637 0.93217 0.86465 0.79916 0.82601 0.78234 1.20380 1.20925 1.19546 1.20833 0.92889 0.88954 1.54325 0.91135 1.20111 0.87652 0.91947 0.85648 0.95538 1.22533 0.97053 0.83739 1.00798 1.45902 1.17727 1.10411 1.63166 1.21536 0.81951 0.92605 0.75937 1.90657 1.68236 1.31505 1.55464 1.22483 0.93712 0.84291 1.03140 1.88610 1.52004 1.42580 1.43749 0.92530 0.90905 0.91588 0.77860 0.87441 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.06 12.86 55.43 0.71 -23.35 14 2 C 0.08 2.12 5.40 -17.82 -0.10 2.02 14 3 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 14 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 14 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 14 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 14 7 C -0.53 -13.90 8.77 -34.44 -0.30 -14.20 14 8 H 0.07 1.74 7.75 -52.48 -0.41 1.34 14 9 C 0.20 4.91 2.52 -27.87 -0.07 4.84 14 10 H 0.03 0.69 8.10 -51.93 -0.42 0.27 14 11 C 0.08 1.60 6.72 -4.05 -0.03 1.57 14 12 N -0.72 -13.46 5.55 -60.66 -0.34 -13.80 14 13 C 0.49 10.30 7.84 -11.56 -0.09 10.21 14 14 O -0.58 -13.16 17.84 5.56 0.10 -13.06 14 15 C 0.04 0.94 6.98 35.83 0.25 1.19 14 16 O -0.35 -8.81 9.92 -35.23 -0.35 -9.16 14 17 H 0.26 7.00 8.31 -40.82 -0.34 6.66 14 18 H 0.07 1.25 8.14 -51.93 -0.42 0.82 14 19 H 0.07 1.27 8.10 -51.93 -0.42 0.85 14 20 H 0.39 6.18 8.86 -40.82 -0.36 5.82 14 21 H 0.11 2.06 8.14 -51.93 -0.42 1.64 14 22 H 0.08 1.55 8.14 -51.93 -0.42 1.13 14 LS Contribution 200.81 15.07 3.03 3.03 Total: -1.00 -30.04 200.81 -4.22 -34.25 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -2.01 Total: 1.33 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -0.34 Total: 5.62 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.38 Total: -37.15 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.25 Total: -22.22 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 3.03 Total: 3.03 kcal Total: -30.04 -4.22 -34.25 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107115531.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.472 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds