Wall clock time and date at job start Mon Mar 30 2020 01:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48501 * 109.47022 * 269.99514 * 3 2 1 5 5 H 1.48500 * 109.47226 * 29.99752 * 3 2 1 6 6 H 1.48503 * 109.47127 * 150.00168 * 3 2 1 7 7 C 1.37869 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99933 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00057 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.60309 * 59.99589 * 9 7 2 11 11 C 1.53020 * 109.60300 * 180.32405 * 9 7 2 12 12 N 1.46464 * 109.71893 * 168.96766 * 11 9 7 13 13 C 1.33875 * 122.60637 * 341.69594 * 12 11 9 14 14 O 1.21275 * 118.83463 * 181.86737 * 13 12 11 15 15 C 1.50347 * 122.33322 * 1.88960 * 13 12 11 16 16 O 1.42973 * 109.80774 * 344.07511 * 15 13 12 17 17 H 0.97004 * 119.99734 * 0.02562 * 1 2 3 18 18 H 1.08999 * 109.39532 * 289.21420 * 11 9 7 19 19 H 1.08995 * 109.39964 * 48.94394 * 11 9 7 20 20 H 0.96994 * 118.66771 * 161.66019 * 12 11 9 21 21 H 1.09001 * 109.41697 * 223.97738 * 15 13 12 22 22 H 1.08993 * 109.36023 * 104.14527 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6238 -2.5593 -0.8889 11 6 2.2426 -3.6644 0.0093 12 7 1.5309 -4.9170 0.2732 13 6 0.3065 -4.9510 0.8136 14 8 -0.2057 -6.0279 1.0343 15 6 -0.4562 -3.7015 1.1561 16 8 0.4318 -2.5810 1.1728 17 1 -0.4850 0.8401 -0.0004 18 1 2.7400 -3.7238 -0.9587 19 1 2.9874 -3.5002 0.7880 20 1 1.9640 -5.7549 0.0469 21 1 -0.9149 -3.8147 2.1384 22 1 -1.2335 -3.5367 0.4101 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107115531.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:04 Heat of formation + Delta-G solvation = -108.016833 kcal Electronic energy + Delta-G solvation = -10033.421765 eV Core-core repulsion = 7973.485979 eV Total energy + Delta-G solvation = -2059.935787 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.20892 -38.44784 -35.47329 -34.74086 -31.19683 -28.13987 -26.75482 -23.84312 -20.52928 -19.15299 -18.34476 -17.61678 -16.64620 -16.40659 -15.94671 -15.18242 -15.11693 -14.36109 -13.97967 -13.15759 -13.00935 -12.75421 -12.32494 -11.92642 -11.44492 -11.22975 -10.64888 -10.18845 -9.94715 -8.19765 -6.40825 1.44052 1.47863 1.49528 1.59916 2.24761 2.43127 2.99952 3.58404 3.64725 4.21952 4.38817 4.49353 4.54642 4.71980 5.25504 5.69910 5.70097 5.90105 6.22862 6.56565 6.84147 7.11937 7.36229 8.89483 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.100569 B = 0.013976 C = 0.012663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 278.350301 B = 2002.899057 C = 2210.567451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.026 3.974 3 Si 0.969 3.031 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.193 3.807 10 H 0.001 0.999 11 C 0.095 3.905 12 N -0.708 5.708 13 C 0.493 3.507 14 O -0.597 6.597 15 C 0.042 3.958 16 O -0.378 6.378 17 H 0.265 0.735 18 H 0.102 0.898 19 H 0.075 0.925 20 H 0.405 0.595 21 H 0.126 0.874 22 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.092 -2.886 -0.741 5.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.794 3.206 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.587 4.587 8 H 0.100 0.900 9 C 0.138 3.862 10 H 0.018 0.982 11 C -0.029 4.029 12 N -0.359 5.359 13 C 0.281 3.719 14 O -0.480 6.480 15 C -0.038 4.038 16 O -0.297 6.297 17 H 0.074 0.926 18 H 0.120 0.880 19 H 0.093 0.907 20 H 0.242 0.758 21 H 0.144 0.856 22 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.613 -2.978 -0.435 4.702 hybrid contribution 0.211 0.330 -0.305 0.496 sum 3.823 -2.648 -0.740 4.709 Atomic orbital electron populations 1.70144 1.07867 1.27939 1.47511 1.25955 0.95618 1.03325 0.92852 0.85397 0.78664 0.78058 0.78517 1.19476 1.21301 1.18569 1.21304 0.93721 0.89979 1.53686 0.89974 1.20090 0.88127 0.93555 0.84469 0.98183 1.22353 0.95629 0.82121 1.02767 1.45720 1.17009 1.11096 1.62058 1.21361 0.82553 0.91943 0.76055 1.90654 1.68874 1.31893 1.56601 1.22608 0.93326 0.83557 1.04314 1.88523 1.52999 1.44356 1.43862 0.92631 0.87996 0.90698 0.75825 0.85645 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.82 12.86 21.44 0.28 -50.55 14 2 C 0.03 1.37 5.40 84.65 0.46 1.82 14 3 Si 0.97 40.84 29.54 68.60 2.03 42.87 14 4 H -0.27 -10.89 7.11 99.48 0.71 -10.18 14 5 H -0.29 -12.15 7.11 99.48 0.71 -11.45 14 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 14 7 C -0.55 -28.19 8.77 25.60 0.22 -27.96 14 8 H 0.08 3.90 7.75 -2.91 -0.02 3.88 14 9 C 0.19 9.26 2.52 29.86 0.08 9.34 14 10 H 0.00 0.03 8.10 -2.39 -0.02 0.01 14 11 C 0.09 3.46 6.72 86.39 0.58 4.04 14 12 N -0.71 -24.76 5.55 -464.74 -2.58 -27.34 14 13 C 0.49 19.94 7.84 87.69 0.69 20.62 14 14 O -0.60 -26.34 17.84 -3.02 -0.05 -26.40 14 15 C 0.04 1.76 6.98 71.13 0.50 2.25 14 16 O -0.38 -18.91 9.92 -148.98 -1.48 -20.38 14 17 H 0.26 14.17 8.31 -92.71 -0.77 13.40 14 18 H 0.10 3.16 8.14 -2.39 -0.02 3.14 14 19 H 0.07 2.66 8.10 -2.39 -0.02 2.64 14 20 H 0.40 11.74 8.86 -92.71 -0.82 10.92 14 21 H 0.13 4.71 8.14 -2.39 -0.02 4.69 14 22 H 0.08 3.11 8.14 -2.39 -0.02 3.09 14 Total: -1.00 -62.50 200.81 1.12 -61.38 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.41 Total: 10.31 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 2.52 Total: 10.11 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -2.30 Total: -77.89 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -1.53 Total: -46.78 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -62.50 1.12 -61.38 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107115531.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.641 kcal (2) G-P(sol) polarization free energy of solvation -62.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds