Wall clock time and date at job start Mon Mar 30 2020 01:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99763 * 2 1 4 4 H 1.48495 * 109.47179 * 269.99867 * 3 2 1 5 5 H 1.48497 * 109.47304 * 29.99716 * 3 2 1 6 6 H 1.48502 * 109.47314 * 149.99841 * 3 2 1 7 7 C 1.37876 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00238 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.59842 * 300.32476 * 9 7 2 11 11 C 1.53018 * 109.60268 * 179.97438 * 9 7 2 12 12 N 1.46093 * 109.84691 * 191.12599 * 11 9 7 13 13 C 1.33690 * 122.67631 * 18.31377 * 12 11 9 14 14 O 1.21280 * 118.88169 * 178.13367 * 13 12 11 15 15 C 1.50347 * 122.28359 * 358.16093 * 13 12 11 16 16 O 1.42973 * 109.80855 * 15.87136 * 15 13 12 17 17 H 0.96991 * 120.00133 * 0.02562 * 1 2 3 18 18 H 1.09002 * 109.39748 * 311.22152 * 11 9 7 19 19 H 1.09000 * 109.39873 * 71.03641 * 11 9 7 20 20 H 0.97000 * 118.73107 * 198.28590 * 12 11 9 21 21 H 1.09007 * 109.41253 * 255.77442 * 15 13 12 22 22 H 1.08991 * 109.41992 * 135.97902 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6190 -2.5564 0.8867 11 6 2.2429 -3.6645 0.0005 12 7 1.5376 -4.9161 -0.2646 13 6 0.3188 -4.9556 -0.8126 14 8 -0.1892 -6.0344 -1.0340 15 6 -0.4443 -3.7089 -1.1646 16 8 0.4411 -2.5864 -1.1776 17 1 -0.4850 0.8400 -0.0004 18 1 2.9935 -3.5010 -0.7728 19 1 2.7320 -3.7236 0.9729 20 1 1.9705 -5.7530 -0.0345 21 1 -1.2284 -3.5433 -0.4257 22 1 -0.8953 -3.8261 -2.1499 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107115535.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:06 Heat of formation + Delta-G solvation = -108.072482 kcal Electronic energy + Delta-G solvation = -10033.986489 eV Core-core repulsion = 7974.048289 eV Total energy + Delta-G solvation = -2059.938200 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.23519 -38.45140 -35.50719 -34.74294 -31.19972 -28.14018 -26.76206 -23.85707 -20.52778 -19.15830 -18.34870 -17.62728 -16.65138 -16.41166 -15.95010 -15.18816 -15.12395 -14.36165 -13.98212 -13.16882 -13.00045 -12.76297 -12.32627 -11.92543 -11.45334 -11.20454 -10.66381 -10.18745 -9.94767 -8.19968 -6.41025 1.44254 1.48200 1.49484 1.59602 2.25593 2.43196 2.99593 3.58820 3.64888 4.21452 4.38731 4.49307 4.54644 4.71898 5.25366 5.69960 5.70203 5.89944 6.23147 6.56773 6.83947 7.11965 7.36020 8.89361 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.100673 B = 0.013967 C = 0.012662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 278.060791 B = 2004.212834 C = 2210.796732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.026 3.974 3 Si 0.969 3.031 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.194 3.806 10 H 0.001 0.999 11 C 0.094 3.906 12 N -0.706 5.706 13 C 0.493 3.507 14 O -0.597 6.597 15 C 0.041 3.959 16 O -0.379 6.379 17 H 0.265 0.735 18 H 0.075 0.925 19 H 0.101 0.899 20 H 0.405 0.595 21 H 0.075 0.925 22 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.105 -2.899 0.772 5.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.793 3.207 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.586 4.586 8 H 0.100 0.900 9 C 0.138 3.862 10 H 0.019 0.981 11 C -0.029 4.029 12 N -0.357 5.357 13 C 0.281 3.719 14 O -0.481 6.481 15 C -0.039 4.039 16 O -0.298 6.298 17 H 0.074 0.926 18 H 0.093 0.907 19 H 0.119 0.881 20 H 0.242 0.758 21 H 0.093 0.907 22 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.631 -2.990 0.475 4.727 hybrid contribution 0.204 0.335 0.278 0.481 sum 3.835 -2.655 0.754 4.724 Atomic orbital electron populations 1.70139 1.07871 1.27958 1.47542 1.25959 0.95620 1.03329 0.92844 0.85399 0.78908 0.78083 0.78283 1.20301 1.20977 1.18028 1.21312 0.93726 0.89965 1.53638 0.89963 1.20093 0.88221 0.93532 0.84387 0.98109 1.22291 0.95730 0.82165 1.02731 1.45592 1.17361 1.11101 1.61636 1.21303 0.82564 0.91920 0.76148 1.90657 1.68936 1.31659 1.56809 1.22610 0.93360 0.83588 1.04300 1.88523 1.53544 1.44277 1.43460 0.92622 0.90697 0.88063 0.75812 0.90690 0.85663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.86 12.88 21.45 0.28 -50.58 14 2 C 0.03 1.36 5.41 84.65 0.46 1.82 14 3 Si 0.97 40.83 29.54 68.60 2.03 42.86 14 4 H -0.28 -11.61 7.11 99.48 0.71 -10.91 14 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 14 6 H -0.26 -10.10 7.11 99.48 0.71 -9.39 14 7 C -0.55 -28.16 8.77 25.60 0.22 -27.93 14 8 H 0.08 3.90 7.75 -2.91 -0.02 3.88 14 9 C 0.19 9.26 2.52 29.85 0.08 9.34 14 10 H 0.00 0.06 8.10 -2.39 -0.02 0.05 14 11 C 0.09 3.44 6.70 86.46 0.58 4.02 14 12 N -0.71 -24.68 5.53 -465.78 -2.58 -27.26 14 13 C 0.49 19.91 7.84 87.72 0.69 20.60 14 14 O -0.60 -26.34 17.84 -3.03 -0.05 -26.39 14 15 C 0.04 1.73 6.99 71.13 0.50 2.23 14 16 O -0.38 -18.93 9.95 -148.98 -1.48 -20.42 14 17 H 0.26 14.17 8.31 -92.71 -0.77 13.40 14 18 H 0.07 2.65 8.10 -2.39 -0.02 2.63 14 19 H 0.10 3.14 8.14 -2.39 -0.02 3.12 14 20 H 0.40 11.73 8.85 -92.71 -0.82 10.91 14 21 H 0.08 3.11 8.14 -2.38 -0.02 3.09 14 22 H 0.13 4.70 8.14 -2.39 -0.02 4.68 14 Total: -1.00 -62.50 200.80 1.12 -61.38 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.41 Total: 10.33 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 2.52 Total: 10.08 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -2.30 Total: -77.84 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -1.54 Total: -46.81 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -62.50 1.12 -61.38 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107115535.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.693 kcal (2) G-P(sol) polarization free energy of solvation -62.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds