Wall clock time and date at job start Mon Mar 30 2020 01:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31463 * 1 3 3 Si 1.86807 * 120.00089 * 2 1 4 4 H 1.48501 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47239 * 300.00046 * 3 2 1 6 6 H 1.48497 * 109.46759 * 60.00485 * 3 2 1 7 7 C 1.38895 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 195.86500 * 7 2 1 9 9 N 1.37189 * 119.99900 * 15.86883 * 7 2 1 10 10 C 1.46065 * 118.52312 * 21.67718 * 9 7 2 11 11 C 1.53130 * 109.91729 * 160.53704 * 10 9 7 12 12 C 1.53480 * 108.36592 * 47.98524 * 11 10 9 13 13 O 1.45436 * 108.14858 * 298.24624 * 12 11 10 14 14 C 1.33730 * 118.52194 * 201.66000 * 9 7 2 15 15 O 1.21506 * 118.45964 * 2.30853 * 14 9 7 16 16 H 0.97000 * 119.99827 * 0.02562 * 1 2 3 17 17 H 1.09003 * 109.39264 * 40.40089 * 10 9 7 18 18 H 1.09000 * 109.32652 * 280.62916 * 10 9 7 19 19 H 1.09008 * 109.68047 * 288.26828 * 11 10 9 20 20 H 1.08999 * 109.71698 * 167.72882 * 11 10 9 21 21 H 1.09003 * 109.73127 * 57.91969 * 12 11 10 22 22 H 1.08998 * 109.73878 * 178.56471 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 3.7087 1.3464 -0.0006 5 1 1.8900 2.3965 -1.2124 6 1 1.8900 2.3963 1.2126 7 6 2.0091 -1.2028 -0.0005 8 1 3.0583 -1.2207 0.2552 9 7 1.3624 -2.3682 -0.3259 10 6 0.1327 -2.2879 -1.1101 11 6 -0.1576 -3.6412 -1.7651 12 6 -0.0165 -4.7352 -0.6979 13 8 1.3552 -4.7224 -0.2147 14 6 1.8864 -3.5265 0.0888 15 8 2.8902 -3.4960 0.7727 16 1 -0.4850 0.8401 -0.0004 17 1 0.2456 -1.5281 -1.8835 18 1 -0.6957 -2.0175 -0.4553 19 1 0.5550 -3.8197 -2.5704 20 1 -1.1718 -3.6464 -2.1645 21 1 -0.6993 -4.5343 0.1276 22 1 -0.2437 -5.7074 -1.1351 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107115538.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:19 Heat of formation + Delta-G solvation = -93.651826 kcal Electronic energy + Delta-G solvation = -10261.500691 eV Core-core repulsion = 8202.187818 eV Total energy + Delta-G solvation = -2059.312873 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.60257 -37.88988 -37.25263 -33.93887 -32.36055 -27.92792 -26.43819 -24.07941 -21.00736 -19.39110 -18.64275 -17.35375 -17.11877 -16.33626 -15.59812 -15.14576 -15.04080 -14.54197 -13.44453 -13.32644 -12.88113 -12.38962 -12.30038 -12.20573 -12.05050 -11.44123 -11.05985 -10.89699 -9.85056 -8.35975 -6.07213 1.37401 1.42348 1.56914 1.91384 2.17078 2.44830 2.99770 3.15289 3.87969 3.93063 4.27878 4.44816 4.67802 4.80229 5.05250 5.39077 5.42234 5.49698 6.21608 6.57145 7.02686 7.47575 7.82705 8.64483 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.069552 B = 0.018217 C = 0.015197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.479316 B = 1536.658213 C = 1842.043746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.000 4.000 3 Si 0.998 3.002 4 H -0.274 1.274 5 H -0.262 1.262 6 H -0.274 1.274 7 C -0.347 4.347 8 H 0.075 0.925 9 N -0.461 5.461 10 C 0.130 3.870 11 C -0.169 4.169 12 C 0.054 3.946 13 O -0.373 6.373 14 C 0.584 3.416 15 O -0.627 6.627 16 H 0.276 0.724 17 H 0.061 0.939 18 H 0.074 0.926 19 H 0.075 0.925 20 H 0.134 0.866 21 H 0.072 0.928 22 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.488 -2.382 -5.469 8.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.201 4.201 3 Si 0.820 3.180 4 H -0.199 1.199 5 H -0.186 1.186 6 H -0.199 1.199 7 C -0.475 4.475 8 H 0.092 0.908 9 N -0.193 5.193 10 C 0.008 3.992 11 C -0.206 4.206 12 C -0.019 4.019 13 O -0.286 6.286 14 C 0.339 3.661 15 O -0.522 6.522 16 H 0.086 0.914 17 H 0.079 0.921 18 H 0.092 0.908 19 H 0.094 0.906 20 H 0.152 0.848 21 H 0.090 0.910 22 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.148 -2.510 -5.168 7.715 hybrid contribution 0.275 0.871 0.159 0.927 sum -4.874 -1.639 -5.009 7.178 Atomic orbital electron populations 1.70079 1.06666 1.28775 1.47819 1.26138 0.96535 1.02319 0.95151 0.84822 0.78098 0.76519 0.78529 1.19872 1.18631 1.19909 1.19665 0.94790 0.83918 1.49083 0.90752 1.43242 1.24821 1.03776 1.47465 1.21519 0.86476 0.96493 0.94733 1.22689 1.05923 0.93678 0.98341 1.23755 0.78267 1.02709 0.97199 1.86543 1.32452 1.28513 1.81053 1.17990 0.85669 0.80292 0.82156 1.90719 1.29920 1.86238 1.45332 0.91404 0.92082 0.90765 0.90600 0.84798 0.90959 0.83358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.76 10.58 21.66 0.23 -46.53 14 2 C 0.00 0.02 5.04 84.91 0.43 0.45 14 3 Si 1.00 42.30 29.58 68.60 2.03 44.32 14 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 14 5 H -0.26 -10.28 7.11 99.48 0.71 -9.57 14 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 14 7 C -0.35 -20.38 9.12 84.01 0.77 -19.62 14 8 H 0.07 4.69 7.26 -2.91 -0.02 4.66 14 9 N -0.46 -25.14 2.98 -768.08 -2.29 -27.44 14 10 C 0.13 5.72 4.80 86.51 0.41 6.13 14 11 C -0.17 -5.19 6.27 30.80 0.19 -5.00 14 12 C 0.05 1.69 7.20 72.14 0.52 2.21 14 13 O -0.37 -17.09 10.51 -52.32 -0.55 -17.64 14 14 C 0.58 32.73 8.26 129.95 1.07 33.81 14 15 O -0.63 -40.50 16.56 19.94 0.33 -40.17 14 16 H 0.28 13.31 8.31 -92.71 -0.77 12.54 14 17 H 0.06 2.78 7.56 -2.39 -0.02 2.77 14 18 H 0.07 3.45 6.90 -2.39 -0.02 3.43 14 19 H 0.08 2.31 8.14 -2.38 -0.02 2.29 14 20 H 0.13 2.91 8.14 -2.39 -0.02 2.89 14 21 H 0.07 2.19 8.14 -2.39 -0.02 2.17 14 22 H 0.15 3.14 8.14 -2.39 -0.02 3.12 14 Total: -1.00 -71.24 194.79 4.36 -66.88 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 1.22 Total: 2.59 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 3.39 Total: 17.98 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -2.06 Total: -73.97 kcal Atomic # 8 Polarization: -57.59 SS G_CDS: -0.22 Total: -57.81 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -71.24 4.36 -66.88 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107115538.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.775 kcal (2) G-P(sol) polarization free energy of solvation -71.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds