Wall clock time and date at job start Mon Mar 30 2020 01:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99996 * 2 1 4 4 H 1.48496 * 109.46738 * 269.99715 * 3 2 1 5 5 H 1.48499 * 109.47126 * 29.99321 * 3 2 1 6 6 H 1.48496 * 109.47215 * 149.99770 * 3 2 1 7 7 C 1.37872 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00512 * 359.72466 * 7 2 1 10 10 N 1.46896 * 109.47380 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99506 * 185.15109 * 10 9 7 12 12 C 1.52996 * 115.55430 * 279.62940 * 11 10 9 13 13 O 1.42900 * 109.47019 * 301.69757 * 12 11 10 14 14 C 1.53008 * 117.49323 * 133.92412 * 11 10 9 15 15 C 1.53000 * 59.99979 * 252.50598 * 14 11 10 16 16 H 0.96994 * 120.00026 * 0.02562 * 1 2 3 17 17 H 1.09001 * 109.46959 * 300.00852 * 9 7 2 18 18 H 1.08999 * 109.46573 * 60.00042 * 9 7 2 19 19 H 1.00895 * 111.00321 * 61.19923 * 10 9 7 20 20 H 1.09000 * 109.46899 * 61.69057 * 12 11 10 21 21 H 1.09001 * 109.47205 * 181.69398 * 12 11 10 22 22 H 0.96701 * 114.00108 * 179.97438 * 13 12 11 23 23 H 1.08998 * 117.49915 * 0.02562 * 14 11 10 24 24 H 1.09004 * 117.49616 * 145.01924 * 14 11 10 25 25 H 1.08996 * 117.50292 * 252.50815 * 15 14 11 26 26 H 1.09004 * 117.51152 * 107.47769 * 15 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0074 10 7 2.2057 -3.6157 0.0072 11 6 1.5091 -4.9038 -0.1093 12 6 0.9057 -5.4474 1.1872 13 8 1.9364 -5.5993 2.1653 14 6 2.0639 -5.9188 -1.1109 15 6 0.7558 -5.1843 -1.4112 16 1 -0.4850 0.8400 -0.0004 17 1 0.6281 -2.5544 0.9001 18 1 0.6208 -2.5594 -0.8798 19 1 2.7888 -3.5931 0.8304 20 1 0.1532 -4.7513 1.5576 21 1 0.4421 -6.4150 0.9946 22 1 1.6252 -5.9405 3.0149 23 1 2.9460 -5.6309 -1.6829 24 1 1.9992 -6.9742 -0.8460 25 1 -0.1696 -5.7564 -1.3439 26 1 0.7767 -4.4128 -2.1809 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126413494.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:52 Heat of formation + Delta-G solvation = -55.835732 kcal Electronic energy + Delta-G solvation = -9925.970143 eV Core-core repulsion = 8004.130193 eV Total energy + Delta-G solvation = -1921.839950 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.64650 -36.84022 -35.43709 -33.29136 -28.58014 -27.44982 -24.26058 -23.00746 -20.33159 -18.59628 -18.29063 -17.10074 -16.64901 -15.97430 -15.18217 -14.88576 -14.30199 -14.12283 -13.50469 -13.10993 -12.76130 -12.51589 -12.28057 -12.06817 -11.59430 -11.33266 -11.13356 -10.66396 -10.59768 -9.12279 -8.23609 -6.34989 1.39671 1.41940 1.53443 2.38832 2.76313 3.08809 3.38915 3.43944 3.99530 4.10982 4.25592 4.47622 4.68574 4.77173 4.81012 5.04278 5.15199 5.26194 5.34285 5.61801 6.03443 6.46679 6.72875 6.85414 6.89651 7.35719 8.87722 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.066705 B = 0.011378 C = 0.010927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.656611 B = 2460.388690 C = 2561.849308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.539 4.539 8 H 0.060 0.940 9 C 0.217 3.783 10 N -0.655 5.655 11 C 0.002 3.998 12 C 0.096 3.904 13 O -0.583 6.583 14 C -0.137 4.137 15 C -0.160 4.160 16 H 0.266 0.734 17 H -0.044 1.044 18 H 0.004 0.996 19 H 0.337 0.663 20 H 0.028 0.972 21 H 0.079 0.921 22 H 0.396 0.604 23 H 0.090 0.910 24 H 0.119 0.881 25 H 0.117 0.883 26 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.054 -10.282 1.457 10.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.577 4.577 8 H 0.078 0.922 9 C 0.089 3.911 10 N -0.285 5.285 11 C -0.090 4.090 12 C 0.017 3.983 13 O -0.391 6.391 14 C -0.174 4.174 15 C -0.197 4.197 16 H 0.074 0.926 17 H -0.026 1.026 18 H 0.022 0.978 19 H 0.155 0.845 20 H 0.047 0.953 21 H 0.097 0.903 22 H 0.245 0.755 23 H 0.108 0.892 24 H 0.137 0.863 25 H 0.135 0.865 26 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.402 -9.882 0.297 9.985 hybrid contribution -0.670 0.790 1.335 1.690 sum 0.732 -9.092 1.632 9.266 Atomic orbital electron populations 1.70088 1.07726 1.28027 1.51455 1.25958 0.95856 1.03344 0.94487 0.85308 0.78455 0.77835 0.78546 1.19694 1.20384 1.18958 1.21559 0.93721 0.91669 1.50773 0.92221 1.19127 0.90440 0.88417 0.93088 1.60379 1.22445 1.00330 1.45324 1.21741 1.03647 0.92922 0.90735 1.22031 0.88919 0.99359 0.88008 1.86430 1.36895 1.89176 1.26576 1.23093 0.96785 0.96981 1.00567 1.23027 0.97082 1.02947 0.96693 0.92551 1.02612 0.97767 0.84524 0.95348 0.90279 0.75468 0.89180 0.86261 0.86470 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.47 13.29 21.45 0.28 -57.19 15 2 C 0.00 0.10 5.46 84.65 0.46 0.56 15 3 Si 0.97 45.48 29.54 68.60 2.03 47.50 15 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 7 C -0.54 -32.26 9.36 25.60 0.24 -32.02 15 8 H 0.06 3.51 7.81 -2.91 -0.02 3.49 15 9 C 0.22 12.21 5.33 85.56 0.46 12.66 15 10 N -0.66 -30.99 6.58 -474.13 -3.12 -34.10 15 11 C 0.00 0.08 2.01 3.53 0.01 0.09 15 12 C 0.10 3.07 7.03 71.98 0.51 3.57 15 13 O -0.58 -17.75 13.20 -148.98 -1.97 -19.72 15 14 C -0.14 -4.16 10.16 30.60 0.31 -3.85 15 15 C -0.16 -5.34 9.52 30.60 0.29 -5.05 15 16 H 0.27 15.26 8.31 -92.71 -0.77 14.49 15 17 H -0.04 -2.65 7.92 -2.39 -0.02 -2.67 15 18 H 0.00 0.25 7.32 -2.39 -0.02 0.24 15 19 H 0.34 16.02 8.36 -89.70 -0.75 15.27 15 20 H 0.03 1.01 7.92 -2.39 -0.02 0.99 15 21 H 0.08 1.92 8.11 -2.39 -0.02 1.90 15 22 H 0.40 7.65 9.12 -74.06 -0.68 6.97 15 23 H 0.09 2.88 8.14 -2.39 -0.02 2.86 15 24 H 0.12 2.83 8.14 -2.38 -0.02 2.81 15 25 H 0.12 3.15 8.14 -2.39 -0.02 3.13 15 26 H 0.08 3.01 7.83 -2.38 -0.02 2.99 15 Total: -1.00 -68.90 229.92 -0.75 -69.65 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -0.25 Total: 17.90 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 2.27 Total: -24.04 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -2.83 Total: -91.29 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -1.97 Total: -19.72 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -68.90 -0.75 -69.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126413494.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.814 kcal (2) G-P(sol) polarization free energy of solvation -68.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds