Wall clock time and date at job start Mon Mar 30 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99720 * 2 1 4 4 H 1.48497 * 109.47189 * 270.00235 * 3 2 1 5 5 H 1.48497 * 109.47033 * 30.00265 * 3 2 1 6 6 H 1.48503 * 109.46862 * 150.00310 * 3 2 1 7 7 C 1.38808 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00019 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99752 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99944 * 174.05436 * 9 7 2 11 11 C 1.53001 * 112.90739 * 293.84955 * 10 9 7 12 12 O 1.42901 * 109.47025 * 312.41217 * 11 10 9 13 13 C 1.53782 * 113.61404 * 65.09618 * 10 9 7 14 14 C 1.53785 * 87.08137 * 89.11721 * 13 10 9 15 15 C 1.53774 * 113.61630 * 162.59656 * 10 9 7 16 16 H 0.96999 * 120.00041 * 0.02562 * 1 2 3 17 17 H 0.96999 * 120.00343 * 354.05707 * 9 7 2 18 18 H 1.08999 * 109.47317 * 72.41176 * 11 10 9 19 19 H 1.09006 * 109.47048 * 192.41242 * 11 10 9 20 20 H 0.96706 * 113.99917 * 180.02562 * 12 11 10 21 21 H 1.09000 * 113.61433 * 334.56882 * 13 10 9 22 22 H 1.08995 * 113.61932 * 203.66541 * 13 10 9 23 23 H 1.09000 * 113.61440 * 139.97997 * 14 13 10 24 24 H 1.09002 * 113.61147 * 270.88638 * 14 13 10 25 25 H 1.08997 * 113.62087 * 156.33890 * 15 10 9 26 26 H 1.09001 * 113.69376 * 25.43795 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4640 0.1298 11 6 3.9170 -3.1272 1.4947 12 8 4.1020 -2.1563 2.5268 13 6 3.9059 -3.4218 -1.0555 14 6 5.1081 -2.7314 -1.7211 15 6 5.5844 -2.3696 -0.3043 16 1 -0.4850 0.8400 -0.0004 17 1 3.8646 -0.3666 -0.0880 18 1 2.9093 -3.5377 1.5585 19 1 4.6447 -3.9297 1.6161 20 1 3.9933 -2.5075 3.4213 21 1 2.9654 -3.2663 -1.5840 22 1 4.0854 -4.4680 -0.8079 23 1 5.7731 -3.4196 -2.2428 24 1 4.8353 -1.8655 -2.3244 25 1 6.2228 -3.1281 0.1487 26 1 6.0003 -1.3650 -0.2268 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129497195.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:24 Heat of formation + Delta-G solvation = -14.176055 kcal Electronic energy + Delta-G solvation = -10340.029093 eV Core-core repulsion = 8419.995642 eV Total energy + Delta-G solvation = -1920.033451 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.85485 -35.43451 -33.15065 -30.43374 -27.18894 -25.21013 -23.39925 -21.45771 -18.11218 -17.54039 -16.55247 -15.20647 -14.53010 -14.16408 -13.67626 -13.22451 -12.62292 -12.00971 -11.82231 -11.08259 -11.06107 -10.83849 -10.37099 -10.17356 -9.99791 -9.64971 -9.48883 -9.10404 -8.76864 -7.15840 -5.69268 -3.03248 3.44802 3.52038 3.52985 4.68515 4.83848 5.16019 5.21458 5.35096 5.50080 5.66926 5.86272 5.96449 6.12720 6.17362 6.30449 6.35925 6.44677 6.77011 6.89161 7.01541 8.07100 8.33053 8.50628 9.29416 10.02579 10.23442 11.49225 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.047073 B = 0.017902 C = 0.016682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.682092 B = 1563.715713 C = 1678.022013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.004 3.996 3 Si 0.882 3.118 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.230 4.230 8 H 0.088 0.912 9 N -0.717 5.717 10 C 0.193 3.807 11 C 0.078 3.922 12 O -0.554 6.554 13 C -0.151 4.151 14 C -0.132 4.132 15 C -0.143 4.143 16 H 0.258 0.742 17 H 0.364 0.636 18 H 0.041 0.959 19 H 0.028 0.972 20 H 0.360 0.640 21 H 0.078 0.922 22 H 0.069 0.931 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.052 -5.931 0.599 11.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.191 4.191 3 Si 0.712 3.288 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.360 4.360 8 H 0.106 0.894 9 N -0.358 5.358 10 C 0.100 3.900 11 C -0.003 4.003 12 O -0.356 6.356 13 C -0.190 4.190 14 C -0.169 4.169 15 C -0.181 4.181 16 H 0.068 0.932 17 H 0.197 0.803 18 H 0.059 0.941 19 H 0.046 0.954 20 H 0.204 0.796 21 H 0.097 0.903 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.905 -5.572 0.087 11.366 hybrid contribution 0.349 0.781 0.535 1.009 sum 10.255 -4.791 0.622 11.336 Atomic orbital electron populations 1.69705 1.05093 1.25686 1.58054 1.24629 0.95180 0.97141 1.02178 0.86559 0.79651 0.85009 0.77553 1.21333 1.21897 1.19941 1.18937 0.80419 0.94507 1.42164 0.89416 1.42225 1.03626 1.01789 1.88194 1.20524 0.90857 0.88467 0.90141 1.22680 0.98168 0.89897 0.89545 1.86634 1.94300 1.38328 1.16353 1.23309 0.99371 0.97522 0.98838 1.22679 0.97730 1.00505 0.96008 1.23178 0.96747 1.01279 0.96873 0.93219 0.80284 0.94052 0.95370 0.79589 0.90323 0.91278 0.92559 0.90163 0.90448 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.04 13.97 55.49 0.78 -29.26 15 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 15 3 Si 0.88 23.03 27.68 -169.99 -4.70 18.32 15 4 H -0.29 -7.35 7.11 56.52 0.40 -6.95 15 5 H -0.29 -7.73 7.11 56.52 0.40 -7.33 15 6 H -0.27 -6.94 6.61 56.52 0.37 -6.56 15 7 C -0.23 -6.63 9.74 -15.06 -0.15 -6.78 15 8 H 0.09 2.69 8.06 -52.48 -0.42 2.27 15 9 N -0.72 -17.76 4.71 -46.48 -0.22 -17.98 15 10 C 0.19 3.89 1.08 -131.01 -0.14 3.75 15 11 C 0.08 1.46 6.41 37.16 0.24 1.69 15 12 O -0.55 -10.94 13.40 -35.23 -0.47 -11.41 15 13 C -0.15 -2.70 7.28 -25.92 -0.19 -2.89 15 14 C -0.13 -2.14 7.99 -25.91 -0.21 -2.34 15 15 C -0.14 -2.41 7.36 -25.92 -0.19 -2.60 15 16 H 0.26 7.90 8.31 -40.82 -0.34 7.56 15 17 H 0.36 9.08 5.80 -40.82 -0.24 8.84 15 18 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 19 H 0.03 0.44 7.92 -51.93 -0.41 0.03 15 20 H 0.36 5.17 9.12 45.56 0.42 5.58 15 21 H 0.08 1.60 7.83 -51.93 -0.41 1.19 15 22 H 0.07 1.06 8.10 -51.93 -0.42 0.64 15 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 24 H 0.08 1.39 8.14 -51.93 -0.42 0.97 15 25 H 0.08 1.12 7.95 -51.93 -0.41 0.71 15 26 H 0.06 1.09 8.10 -51.93 -0.42 0.66 15 LS Contribution 221.55 15.07 3.34 3.34 Total: -1.00 -33.03 221.55 -4.76 -37.79 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -2.75 Total: 8.34 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -0.73 Total: -9.14 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.56 Total: -47.25 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.47 Total: -11.41 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.70 Total: 18.32 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -33.03 -4.76 -37.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129497195.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.618 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds