Wall clock time and date at job start Mon Mar 30 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99720 * 2 1 4 4 H 1.48497 * 109.47189 * 270.00235 * 3 2 1 5 5 H 1.48497 * 109.47033 * 30.00265 * 3 2 1 6 6 H 1.48503 * 109.46862 * 150.00310 * 3 2 1 7 7 C 1.38808 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00019 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99752 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99944 * 174.05436 * 9 7 2 11 11 C 1.53001 * 112.90739 * 293.84955 * 10 9 7 12 12 O 1.42901 * 109.47025 * 312.41217 * 11 10 9 13 13 C 1.53782 * 113.61404 * 65.09618 * 10 9 7 14 14 C 1.53785 * 87.08137 * 89.11721 * 13 10 9 15 15 C 1.53774 * 113.61630 * 162.59656 * 10 9 7 16 16 H 0.96999 * 120.00041 * 0.02562 * 1 2 3 17 17 H 0.96999 * 120.00343 * 354.05707 * 9 7 2 18 18 H 1.08999 * 109.47317 * 72.41176 * 11 10 9 19 19 H 1.09006 * 109.47048 * 192.41242 * 11 10 9 20 20 H 0.96706 * 113.99917 * 180.02562 * 12 11 10 21 21 H 1.09000 * 113.61433 * 334.56882 * 13 10 9 22 22 H 1.08995 * 113.61932 * 203.66541 * 13 10 9 23 23 H 1.09000 * 113.61440 * 139.97997 * 14 13 10 24 24 H 1.09002 * 113.61147 * 270.88638 * 14 13 10 25 25 H 1.08997 * 113.62087 * 156.33890 * 15 10 9 26 26 H 1.09001 * 113.69376 * 25.43795 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4640 0.1298 11 6 3.9170 -3.1272 1.4947 12 8 4.1020 -2.1563 2.5268 13 6 3.9059 -3.4218 -1.0555 14 6 5.1081 -2.7314 -1.7211 15 6 5.5844 -2.3696 -0.3043 16 1 -0.4850 0.8400 -0.0004 17 1 3.8646 -0.3666 -0.0880 18 1 2.9093 -3.5377 1.5585 19 1 4.6447 -3.9297 1.6161 20 1 3.9933 -2.5075 3.4213 21 1 2.9654 -3.2663 -1.5840 22 1 4.0854 -4.4680 -0.8079 23 1 5.7731 -3.4196 -2.2428 24 1 4.8353 -1.8655 -2.3244 25 1 6.2228 -3.1281 0.1487 26 1 6.0003 -1.3650 -0.2268 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129497195.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:24 Heat of formation + Delta-G solvation = -40.410023 kcal Electronic energy + Delta-G solvation = -10341.166683 eV Core-core repulsion = 8419.995642 eV Total energy + Delta-G solvation = -1921.171041 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.35034 -36.90794 -35.23293 -32.53058 -28.72965 -26.64614 -25.41523 -22.93255 -19.86291 -19.56080 -18.03203 -16.81752 -16.25035 -15.95316 -15.14593 -14.90551 -14.71445 -13.80678 -13.14619 -13.00323 -12.78533 -12.51865 -12.22086 -11.79783 -11.64331 -11.55515 -11.08396 -10.80025 -10.58307 -9.22531 -7.99460 -5.30155 1.36671 1.40125 1.48287 2.50686 3.30511 3.41244 3.58968 3.81014 4.02238 4.23410 4.36249 4.56490 4.79699 4.84903 4.88644 4.97514 5.11669 5.32597 5.38884 5.65017 5.83370 6.25615 7.06351 7.13935 7.90754 8.07982 9.22507 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.047073 B = 0.017902 C = 0.016682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.682092 B = 1563.715713 C = 1678.022013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.068 4.068 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.260 1.260 7 C -0.207 4.207 8 H 0.055 0.945 9 N -0.724 5.724 10 C 0.158 3.842 11 C 0.079 3.921 12 O -0.580 6.580 13 C -0.148 4.148 14 C -0.123 4.123 15 C -0.128 4.128 16 H 0.255 0.745 17 H 0.363 0.637 18 H 0.018 0.982 19 H 0.073 0.927 20 H 0.382 0.618 21 H 0.042 0.958 22 H 0.102 0.898 23 H 0.092 0.908 24 H 0.061 0.939 25 H 0.112 0.888 26 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.720 -6.498 0.665 14.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.258 4.258 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.185 1.185 7 C -0.338 4.338 8 H 0.073 0.927 9 N -0.365 5.365 10 C 0.067 3.933 11 C -0.001 4.001 12 O -0.386 6.386 13 C -0.188 4.188 14 C -0.160 4.160 15 C -0.165 4.165 16 H 0.064 0.936 17 H 0.196 0.804 18 H 0.036 0.964 19 H 0.091 0.909 20 H 0.229 0.771 21 H 0.061 0.939 22 H 0.120 0.880 23 H 0.111 0.889 24 H 0.080 0.920 25 H 0.130 0.870 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.629 -6.185 0.164 14.063 hybrid contribution -0.465 0.810 0.538 1.078 sum 12.163 -5.374 0.702 13.316 Atomic orbital electron populations 1.69878 1.06944 1.26319 1.60748 1.25407 0.96039 1.00932 1.03455 0.85437 0.78523 0.80173 0.77851 1.20426 1.22508 1.18488 1.18858 0.82397 0.93075 1.39442 0.92668 1.42236 1.02149 1.03773 1.88343 1.21124 0.93271 0.87244 0.91659 1.22666 0.98256 0.90534 0.88603 1.86562 1.94309 1.39659 1.18037 1.23323 0.98642 0.99159 0.97646 1.22627 0.97160 1.00269 0.95989 1.23170 0.94445 1.02231 0.96681 0.93613 0.80439 0.96394 0.90875 0.77088 0.93922 0.87976 0.88941 0.92041 0.87001 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.21 13.97 21.65 0.30 -64.91 15 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 15 3 Si 0.95 48.15 27.68 68.60 1.90 50.05 15 4 H -0.28 -13.55 7.11 99.48 0.71 -12.84 15 5 H -0.30 -15.24 7.11 99.48 0.71 -14.53 15 6 H -0.26 -12.39 6.61 99.48 0.66 -11.74 15 7 C -0.21 -12.11 9.74 84.03 0.82 -11.29 15 8 H 0.06 3.53 8.06 -2.91 -0.02 3.51 15 9 N -0.72 -35.36 4.71 -300.97 -1.42 -36.77 15 10 C 0.16 6.04 1.08 4.13 0.00 6.05 15 11 C 0.08 2.79 6.41 71.98 0.46 3.25 15 12 O -0.58 -21.69 13.40 -148.98 -2.00 -23.68 15 13 C -0.15 -5.02 7.28 31.12 0.23 -4.79 15 14 C -0.12 -3.58 7.99 31.12 0.25 -3.33 15 15 C -0.13 -3.79 7.36 31.12 0.23 -3.56 15 16 H 0.26 16.10 8.31 -92.71 -0.77 15.33 15 17 H 0.36 17.59 5.80 -92.71 -0.54 17.05 15 18 H 0.02 0.70 8.14 -2.39 -0.02 0.68 15 19 H 0.07 1.93 7.92 -2.38 -0.02 1.91 15 20 H 0.38 10.15 9.12 -74.05 -0.68 9.48 15 21 H 0.04 1.73 7.83 -2.39 -0.02 1.71 15 22 H 0.10 2.75 8.10 -2.39 -0.02 2.73 15 23 H 0.09 2.05 8.14 -2.39 -0.02 2.03 15 24 H 0.06 2.01 8.14 -2.39 -0.02 2.00 15 25 H 0.11 2.58 7.95 -2.39 -0.02 2.56 15 26 H 0.06 1.80 8.10 -2.39 -0.02 1.78 15 Total: -1.00 -72.15 221.55 1.16 -71.00 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -0.09 Total: 21.67 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 2.46 Total: -17.35 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -1.11 Total: -101.68 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -2.00 Total: -23.68 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 1.90 Total: 50.05 kcal Total: -72.15 1.16 -71.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129497195.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.585 kcal (2) G-P(sol) polarization free energy of solvation -72.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds