Wall clock time and date at job start Mon Mar 30 2020 02:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00227 * 2 1 4 4 H 1.48503 * 109.47294 * 270.00278 * 3 2 1 5 5 H 1.48499 * 109.47218 * 30.00138 * 3 2 1 6 6 H 1.48505 * 109.47256 * 150.00144 * 3 2 1 7 7 C 1.38811 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 359.97438 * 7 2 1 9 9 N 1.36945 * 120.00031 * 179.97438 * 7 2 1 10 10 C 1.46493 * 119.99892 * 179.72716 * 9 7 2 11 11 C 1.53001 * 109.47086 * 179.97438 * 10 9 7 12 12 O 1.42902 * 112.84929 * 53.80127 * 11 10 9 13 13 C 1.53781 * 113.61569 * 282.49824 * 11 10 9 14 14 C 1.53781 * 87.08100 * 220.01556 * 13 11 10 15 15 C 1.53778 * 113.61904 * 184.99563 * 11 10 9 16 16 H 0.97004 * 120.00256 * 359.97438 * 1 2 3 17 17 H 0.97000 * 119.99317 * 359.97438 * 9 7 2 18 18 H 1.08998 * 109.47351 * 299.99725 * 10 9 7 19 19 H 1.09001 * 109.47288 * 59.99879 * 10 9 7 20 20 H 0.96708 * 113.99830 * 309.67144 * 12 11 10 21 21 H 1.09001 * 113.61484 * 334.56312 * 13 11 10 22 22 H 1.08995 * 113.61554 * 105.46702 * 13 11 10 23 23 H 1.09001 * 113.61595 * 270.88237 * 14 13 11 24 24 H 1.09000 * 113.69511 * 139.98673 * 14 13 11 25 25 H 1.08995 * 113.62086 * 254.53370 * 15 11 10 26 26 H 1.09005 * 113.60990 * 25.43448 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4710 0.0044 11 6 5.6162 -2.1915 0.0019 12 8 6.0206 -1.3204 1.0602 13 6 6.1651 -1.7857 -1.3761 14 6 7.3917 -2.6565 -1.0565 15 6 6.4783 -3.4595 -0.1154 16 1 -0.4851 0.8401 0.0004 17 1 3.8645 -0.3622 -0.0014 18 1 3.8490 -3.0385 0.8971 19 1 3.8482 -3.0466 -0.8829 20 1 5.4968 -0.5100 1.1243 21 1 5.5704 -2.1585 -2.2100 22 1 6.3937 -0.7233 -1.4595 23 1 8.1864 -2.1186 -0.5396 24 1 7.7546 -3.2316 -1.9084 25 1 6.9596 -3.7484 0.8189 26 1 5.9690 -4.2899 -0.6047 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131206570.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:23 Heat of formation + Delta-G solvation = -17.611620 kcal Electronic energy + Delta-G solvation = -10135.702404 eV Core-core repulsion = 8215.519976 eV Total energy + Delta-G solvation = -1920.182428 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.36647 -34.62490 -34.03833 -31.27237 -27.32716 -25.51797 -23.26726 -21.32671 -19.39230 -18.05696 -15.96568 -15.00166 -14.90384 -14.45464 -13.79962 -13.24509 -12.74729 -12.46268 -12.12306 -11.50698 -11.46952 -10.92028 -10.88842 -10.68807 -10.27041 -9.90186 -9.59644 -9.23687 -8.93838 -7.29610 -5.80547 -3.17286 3.31761 3.35508 3.42065 4.33540 4.54604 4.76635 4.85225 5.03989 5.25833 5.49988 5.56565 5.83774 5.85559 5.92845 6.05418 6.15695 6.29027 6.49637 6.61997 6.69587 7.87598 8.02325 8.37451 9.14916 9.87145 10.05624 11.37746 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.073240 B = 0.013443 C = 0.012455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.212109 B = 2082.385116 C = 2247.635057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.754 5.754 10 C 0.140 3.860 11 C 0.097 3.903 12 O -0.547 6.547 13 C -0.162 4.162 14 C -0.136 4.136 15 C -0.124 4.124 16 H 0.260 0.740 17 H 0.357 0.643 18 H 0.034 0.966 19 H 0.038 0.962 20 H 0.380 0.620 21 H 0.090 0.910 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.778 -3.394 -1.623 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.717 3.283 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.400 5.400 10 C 0.013 3.987 11 C 0.056 3.944 12 O -0.354 6.354 13 C -0.200 4.200 14 C -0.173 4.173 15 C -0.162 4.162 16 H 0.070 0.930 17 H 0.190 0.810 18 H 0.052 0.948 19 H 0.056 0.944 20 H 0.230 0.770 21 H 0.108 0.892 22 H 0.085 0.915 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.970 -3.949 -1.521 13.643 hybrid contribution 0.036 1.711 -0.099 1.714 sum 13.006 -2.238 -1.620 13.296 Atomic orbital electron populations 1.69698 1.05096 1.25894 1.57344 1.24687 0.95274 0.97232 1.01908 0.86530 0.79063 0.84965 0.77751 1.21033 1.21565 1.20532 1.19058 0.80410 0.94860 1.43276 0.89100 1.42608 1.04179 1.01922 1.91326 1.21198 0.88358 0.89732 0.99425 1.22495 0.93649 0.91566 0.86711 1.86340 1.61122 1.35226 1.52726 1.23576 0.97584 1.00414 0.98439 1.22765 0.96857 0.98542 0.99153 1.22962 0.97291 0.95775 1.00143 0.92972 0.81043 0.94791 0.94385 0.77043 0.89181 0.91463 0.90266 0.91742 0.90889 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.38 13.97 55.49 0.78 -28.60 15 2 C 0.00 0.14 5.50 -17.43 -0.10 0.05 15 3 Si 0.89 21.97 27.73 -169.99 -4.71 17.26 15 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 15 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 15 6 H -0.28 -6.36 6.52 56.52 0.37 -5.99 15 7 C -0.25 -7.04 10.47 -15.06 -0.16 -7.19 15 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 15 9 N -0.75 -17.98 5.19 -59.91 -0.31 -18.29 15 10 C 0.14 2.80 5.84 -4.04 -0.02 2.78 15 11 C 0.10 1.63 1.41 -89.81 -0.13 1.51 15 12 O -0.55 -9.73 13.41 -35.23 -0.47 -10.21 15 13 C -0.16 -2.44 7.47 -25.92 -0.19 -2.63 15 14 C -0.14 -1.74 8.02 -25.92 -0.21 -1.95 15 15 C -0.12 -1.71 7.47 -25.92 -0.19 -1.90 15 16 H 0.26 7.78 8.31 -40.82 -0.34 7.44 15 17 H 0.36 8.14 4.37 -40.82 -0.18 7.96 15 18 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15 19 H 0.04 0.75 8.05 -51.93 -0.42 0.33 15 20 H 0.38 6.51 7.62 45.56 0.35 6.86 15 21 H 0.09 1.33 8.03 -51.93 -0.42 0.92 15 22 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 23 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 15 25 H 0.07 0.99 8.14 -51.93 -0.42 0.56 15 26 H 0.09 1.15 8.10 -51.93 -0.42 0.72 15 LS Contribution 220.48 15.07 3.32 3.32 Total: -1.00 -31.22 220.48 -5.19 -36.41 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -2.79 Total: 9.45 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -1.00 Total: -9.34 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.46 Total: -46.89 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -0.47 Total: -10.21 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.26 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -31.22 -5.19 -36.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131206570.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.795 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds