Wall clock time and date at job start Mon Mar 30 2020 02:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00227 * 2 1 4 4 H 1.48503 * 109.47294 * 270.00278 * 3 2 1 5 5 H 1.48499 * 109.47218 * 30.00138 * 3 2 1 6 6 H 1.48505 * 109.47256 * 150.00144 * 3 2 1 7 7 C 1.38811 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 359.97438 * 7 2 1 9 9 N 1.36945 * 120.00031 * 179.97438 * 7 2 1 10 10 C 1.46493 * 119.99892 * 179.72716 * 9 7 2 11 11 C 1.53001 * 109.47086 * 179.97438 * 10 9 7 12 12 O 1.42902 * 112.84929 * 53.80127 * 11 10 9 13 13 C 1.53781 * 113.61569 * 282.49824 * 11 10 9 14 14 C 1.53781 * 87.08100 * 220.01556 * 13 11 10 15 15 C 1.53778 * 113.61904 * 184.99563 * 11 10 9 16 16 H 0.97004 * 120.00256 * 359.97438 * 1 2 3 17 17 H 0.97000 * 119.99317 * 359.97438 * 9 7 2 18 18 H 1.08998 * 109.47351 * 299.99725 * 10 9 7 19 19 H 1.09001 * 109.47288 * 59.99879 * 10 9 7 20 20 H 0.96708 * 113.99830 * 309.67144 * 12 11 10 21 21 H 1.09001 * 113.61484 * 334.56312 * 13 11 10 22 22 H 1.08995 * 113.61554 * 105.46702 * 13 11 10 23 23 H 1.09001 * 113.61595 * 270.88237 * 14 13 11 24 24 H 1.09000 * 113.69511 * 139.98673 * 14 13 11 25 25 H 1.08995 * 113.62086 * 254.53370 * 15 11 10 26 26 H 1.09005 * 113.60990 * 25.43448 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4710 0.0044 11 6 5.6162 -2.1915 0.0019 12 8 6.0206 -1.3204 1.0602 13 6 6.1651 -1.7857 -1.3761 14 6 7.3917 -2.6565 -1.0565 15 6 6.4783 -3.4595 -0.1154 16 1 -0.4851 0.8401 0.0004 17 1 3.8645 -0.3622 -0.0014 18 1 3.8490 -3.0385 0.8971 19 1 3.8482 -3.0466 -0.8829 20 1 5.4968 -0.5100 1.1243 21 1 5.5704 -2.1585 -2.2100 22 1 6.3937 -0.7233 -1.4595 23 1 8.1864 -2.1186 -0.5396 24 1 7.7546 -3.2316 -1.9084 25 1 6.9596 -3.7484 0.8189 26 1 5.9690 -4.2899 -0.6047 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131206570.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:23 Heat of formation + Delta-G solvation = -41.416205 kcal Electronic energy + Delta-G solvation = -10136.734648 eV Core-core repulsion = 8215.519976 eV Total energy + Delta-G solvation = -1921.214672 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.63572 -36.40196 -35.50102 -33.39922 -29.03868 -26.66482 -25.03067 -22.95621 -20.61133 -20.09010 -17.42349 -16.75169 -16.34041 -15.93929 -15.39981 -14.80312 -14.64887 -13.98700 -13.60886 -13.19006 -13.01695 -12.68202 -12.18641 -12.06766 -11.87296 -11.74431 -11.12253 -11.02218 -10.54758 -9.37865 -8.06670 -5.42474 1.34791 1.40242 1.47070 2.45144 3.07679 3.26052 3.38337 3.66844 3.91286 3.94351 4.07523 4.55993 4.76445 4.84932 4.85897 4.89750 5.06382 5.12138 5.35947 5.46629 5.69675 6.15602 6.62796 7.01957 7.74714 7.94555 9.14630 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.073240 B = 0.013443 C = 0.012455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.212109 B = 2082.385116 C = 2247.635057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.246 1.246 7 C -0.243 4.243 8 H 0.055 0.945 9 N -0.753 5.753 10 C 0.137 3.863 11 C 0.087 3.913 12 O -0.554 6.554 13 C -0.164 4.164 14 C -0.121 4.121 15 C -0.119 4.119 16 H 0.260 0.740 17 H 0.365 0.635 18 H 0.022 0.978 19 H 0.042 0.958 20 H 0.381 0.619 21 H 0.091 0.909 22 H 0.066 0.934 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.186 -2.999 -2.011 15.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.254 4.254 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.171 1.171 7 C -0.373 4.373 8 H 0.073 0.927 9 N -0.400 5.400 10 C 0.011 3.989 11 C 0.046 3.954 12 O -0.361 6.361 13 C -0.202 4.202 14 C -0.158 4.158 15 C -0.157 4.157 16 H 0.068 0.932 17 H 0.198 0.802 18 H 0.040 0.960 19 H 0.060 0.940 20 H 0.230 0.770 21 H 0.109 0.891 22 H 0.085 0.915 23 H 0.100 0.900 24 H 0.108 0.892 25 H 0.094 0.906 26 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.430 -3.585 -1.908 15.956 hybrid contribution -0.765 1.475 0.027 1.662 sum 14.665 -2.110 -1.881 14.935 Atomic orbital electron populations 1.69888 1.07260 1.26924 1.59173 1.25573 0.96197 1.01508 1.02125 0.85378 0.78830 0.79134 0.78242 1.20272 1.22077 1.17052 1.19023 0.82547 0.93612 1.42163 0.92710 1.42529 1.02553 1.03786 1.91124 1.21371 0.90684 0.88044 0.98840 1.22693 0.91459 0.93482 0.87800 1.86347 1.61053 1.35388 1.53301 1.23600 0.98609 1.00947 0.97022 1.22704 0.95839 0.97724 0.99569 1.23043 0.96798 0.94983 1.00869 0.93158 0.80161 0.96011 0.94015 0.76975 0.89097 0.91519 0.90026 0.89248 0.90553 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.24 13.97 21.65 0.30 -62.94 15 2 C -0.06 -3.69 5.50 84.86 0.47 -3.22 15 3 Si 0.96 44.79 27.73 68.60 1.90 46.69 15 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 5 H -0.29 -13.95 7.11 99.48 0.71 -13.25 15 6 H -0.25 -10.06 6.52 99.48 0.65 -9.42 15 7 C -0.24 -14.03 10.47 84.03 0.88 -13.15 15 8 H 0.05 3.49 8.06 -2.91 -0.02 3.46 15 9 N -0.75 -35.24 5.19 -343.46 -1.78 -37.02 15 10 C 0.14 5.35 5.84 86.38 0.50 5.86 15 11 C 0.09 2.72 1.41 -10.27 -0.01 2.71 15 12 O -0.55 -18.43 13.41 -148.98 -2.00 -20.43 15 13 C -0.16 -4.44 7.47 31.12 0.23 -4.21 15 14 C -0.12 -2.65 8.02 31.12 0.25 -2.40 15 15 C -0.12 -2.92 7.47 31.12 0.23 -2.69 15 16 H 0.26 15.84 8.31 -92.71 -0.77 15.07 15 17 H 0.36 15.85 4.37 -92.71 -0.41 15.44 15 18 H 0.02 0.90 8.14 -2.39 -0.02 0.89 15 19 H 0.04 1.61 8.05 -2.39 -0.02 1.59 15 20 H 0.38 12.17 7.62 -74.05 -0.56 11.61 15 21 H 0.09 2.44 8.03 -2.39 -0.02 2.42 15 22 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 23 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 24 H 0.09 1.55 8.14 -2.39 -0.02 1.53 15 25 H 0.08 1.84 8.14 -2.39 -0.02 1.82 15 26 H 0.11 2.31 8.10 -2.38 -0.02 2.29 15 Total: -1.00 -66.81 220.48 1.12 -65.69 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.14 Total: 25.12 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 2.55 Total: -17.11 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -1.48 Total: -99.95 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -2.00 Total: -20.43 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.90 Total: 46.69 kcal Total: -66.81 1.12 -65.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131206570.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.270 kcal (2) G-P(sol) polarization free energy of solvation -66.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds