Wall clock time and date at job start Mon Mar 30 2020 02:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31590 * 1 3 3 Si 1.86800 * 119.99631 * 2 1 4 4 H 1.48503 * 109.46765 * 240.27041 * 3 2 1 5 5 H 1.48495 * 109.47425 * 0.26972 * 3 2 1 6 6 H 1.48499 * 109.47292 * 120.27711 * 3 2 1 7 7 C 1.38635 * 120.00030 * 180.26793 * 2 1 3 8 8 H 1.07999 * 119.99955 * 179.72962 * 7 2 1 9 9 O 1.34924 * 119.99732 * 359.72697 * 7 2 1 10 10 C 1.42903 * 116.99856 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.43228 * 31.09157 * 10 9 7 12 12 C 1.54889 * 110.48657 * 268.54838 * 10 9 7 13 13 C 1.54890 * 102.74548 * 203.37754 * 12 10 9 14 14 C 1.54261 * 104.19905 * 37.94239 * 13 12 10 15 15 C 1.53875 * 106.59892 * 336.39291 * 14 13 12 16 16 H 1.08999 * 110.03112 * 240.71488 * 15 14 13 17 17 N 1.46895 * 110.03497 * 119.28048 * 15 14 13 18 18 H 0.97000 * 119.99711 * 359.73325 * 1 2 3 19 19 H 1.08994 * 110.76061 * 321.69397 * 12 10 9 20 20 H 1.09005 * 110.75394 * 84.88159 * 12 10 9 21 21 H 1.09000 * 110.48638 * 156.62452 * 13 12 10 22 22 H 1.09010 * 110.48821 * 279.26256 * 13 12 10 23 23 H 1.09002 * 110.03213 * 95.67398 * 14 13 12 24 24 H 1.08992 * 110.03603 * 217.05269 * 14 13 12 25 25 H 1.00906 * 110.99874 * 62.83669 * 17 15 14 26 26 H 1.00899 * 110.99675 * 186.78478 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.0986 1.6993 -1.2158 5 1 1.2848 2.7465 0.0066 6 1 3.1086 1.6936 1.2091 7 6 2.0091 -1.2006 -0.0056 8 1 3.0891 -1.2006 -0.0100 9 8 1.3344 -2.3691 -0.0055 10 6 2.1127 -3.5675 -0.0120 11 1 3.0559 -3.4116 0.5116 12 6 2.3706 -4.0385 -1.4649 13 6 2.6449 -5.5528 -1.2896 14 6 1.6609 -5.9903 -0.1850 15 6 1.3224 -4.7280 0.6272 16 1 1.6267 -4.8594 1.6656 17 7 -0.1191 -4.4548 0.5554 18 1 -0.4850 0.8401 0.0039 19 1 1.4901 -3.8749 -2.0861 20 1 3.2387 -3.5321 -1.8868 21 1 2.4397 -6.0876 -2.2169 22 1 3.6742 -5.7198 -0.9716 23 1 0.7555 -6.4002 -0.6325 24 1 2.1290 -6.7350 0.4586 25 1 -0.6506 -5.2057 0.9700 26 1 -0.3418 -3.5716 0.9894 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131381772.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:36 Heat of formation + Delta-G solvation = -43.254817 kcal Electronic energy + Delta-G solvation = -10212.394887 eV Core-core repulsion = 8291.100487 eV Total energy + Delta-G solvation = -1921.294400 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.07748 -34.94067 -31.77786 -31.46986 -27.12941 -25.76103 -24.10542 -20.09972 -18.94364 -17.60925 -15.50577 -15.27536 -14.52875 -14.16093 -13.61437 -13.33080 -12.44984 -11.87541 -11.55099 -11.17417 -10.93516 -10.82106 -10.54081 -10.41876 -10.15960 -9.83405 -9.39449 -8.99861 -7.96993 -7.74597 -5.88160 -3.50496 3.34635 3.36883 3.39694 4.35591 5.11445 5.19887 5.25544 5.47113 5.60507 5.79918 5.98648 6.12696 6.17275 6.20271 6.42081 6.44660 6.68269 6.80657 6.97360 7.14241 7.52028 7.96756 8.32558 8.51279 9.55261 10.27847 11.32380 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.076812 B = 0.013353 C = 0.012058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.440477 B = 2096.379442 C = 2321.503418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.023 3.977 3 Si 0.922 3.078 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.360 4.360 8 H 0.059 0.941 9 O -0.272 6.272 10 C 0.098 3.902 11 H 0.041 0.959 12 C -0.137 4.137 13 C -0.121 4.121 14 C -0.116 4.116 15 C 0.091 3.909 16 H 0.025 0.975 17 N -0.828 5.828 18 H 0.257 0.743 19 H 0.075 0.925 20 H 0.055 0.945 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.320 0.680 26 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 -8.209 0.511 9.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.175 4.175 3 Si 0.749 3.251 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.440 4.440 8 H 0.076 0.924 9 O -0.186 6.186 10 C 0.038 3.962 11 H 0.058 0.942 12 C -0.175 4.175 13 C -0.158 4.158 14 C -0.154 4.154 15 C -0.021 4.021 16 H 0.043 0.957 17 N -0.360 5.360 18 H 0.067 0.933 19 H 0.094 0.906 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.131 0.869 26 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.539 -8.077 -0.272 8.823 hybrid contribution 0.829 0.798 1.038 1.550 sum 4.368 -7.279 0.766 8.524 Atomic orbital electron populations 1.70013 1.05223 1.25773 1.51952 1.24904 0.95631 0.97527 0.99480 0.86101 0.78558 0.82149 0.78281 1.20499 1.20946 1.20578 1.20840 0.89997 0.83092 1.50034 0.92378 1.85660 1.30817 1.09761 1.92344 1.22657 0.92692 0.87384 0.93464 0.94155 1.22945 1.01347 0.93558 0.99669 1.22208 0.98231 0.97349 0.98053 1.22202 0.99482 0.96505 0.97250 1.21958 0.89864 0.94561 0.95707 0.95749 1.58582 1.04275 1.07624 1.65542 0.93328 0.90636 0.92667 0.92296 0.92505 0.91065 0.92836 0.86928 0.82186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.79 13.68 55.48 0.76 -27.03 15 2 C 0.02 0.67 5.49 -17.51 -0.10 0.58 15 3 Si 0.92 22.34 29.55 -169.99 -5.02 17.32 15 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.36 -10.64 9.82 30.88 0.30 -10.34 15 8 H 0.06 1.63 7.68 -52.49 -0.40 1.23 15 9 O -0.27 -7.71 8.05 -16.49 -0.13 -7.85 15 10 C 0.10 2.23 3.29 -25.07 -0.08 2.14 15 11 H 0.04 0.91 7.88 -51.93 -0.41 0.50 15 12 C -0.14 -2.78 6.62 -24.74 -0.16 -2.94 15 13 C -0.12 -1.92 6.83 -25.07 -0.17 -2.09 15 14 C -0.12 -1.84 6.59 -25.62 -0.17 -2.01 15 15 C 0.09 1.75 4.01 -66.60 -0.27 1.48 15 16 H 0.02 0.45 8.14 -51.93 -0.42 0.03 15 17 N -0.83 -16.37 8.86 -3.72 -0.03 -16.40 15 18 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 19 H 0.07 1.68 8.14 -51.93 -0.42 1.26 15 20 H 0.05 1.09 8.14 -51.93 -0.42 0.67 15 21 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 22 H 0.06 0.82 8.14 -51.92 -0.42 0.39 15 23 H 0.07 1.11 7.92 -51.93 -0.41 0.70 15 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.32 5.16 9.07 -39.29 -0.36 4.81 15 26 H 0.36 8.13 7.97 -39.29 -0.31 7.82 15 LS Contribution 221.77 15.07 3.34 3.34 Total: -1.00 -31.92 221.77 -5.30 -37.21 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -3.56 Total: 6.59 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -0.65 Total: -13.18 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.73 Total: -43.43 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.13 Total: -7.85 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -31.92 -5.30 -37.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131381772.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.041 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds