Wall clock time and date at job start Mon Mar 30 2020 02:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86797 * 119.99790 * 2 1 4 4 H 1.48500 * 109.47029 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47293 * 299.99778 * 3 2 1 6 6 H 1.48501 * 109.47548 * 59.99851 * 3 2 1 7 7 C 1.38630 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00044 * 180.02562 * 7 2 1 9 9 O 1.34931 * 119.99980 * 0.02562 * 7 2 1 10 10 C 1.42898 * 116.99859 * 179.97438 * 9 7 2 11 11 H 1.08993 * 110.43870 * 328.91543 * 10 9 7 12 12 C 1.54899 * 110.48322 * 91.45306 * 10 9 7 13 13 C 1.54891 * 102.74611 * 156.62058 * 12 10 9 14 14 C 1.54266 * 104.19455 * 322.05486 * 13 12 10 15 15 C 1.53869 * 106.60029 * 23.61419 * 14 13 12 16 16 H 1.09009 * 110.03169 * 240.71589 * 15 14 13 17 17 N 1.46894 * 110.03744 * 119.28338 * 15 14 13 18 18 H 0.97001 * 120.00441 * 0.02562 * 1 2 3 19 19 H 1.08997 * 110.75810 * 38.30445 * 12 10 9 20 20 H 1.08994 * 110.75501 * 274.93020 * 12 10 9 21 21 H 1.09000 * 110.48374 * 203.37774 * 13 12 10 22 22 H 1.08997 * 110.60279 * 80.78868 * 13 12 10 23 23 H 1.09000 * 110.03049 * 142.90078 * 14 13 12 24 24 H 1.09001 * 110.03650 * 264.32561 * 14 13 12 25 25 H 1.00904 * 110.99893 * 61.45452 * 17 15 14 26 26 H 1.00893 * 111.00258 * 185.40621 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3464 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8910 2.3965 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2005 0.0010 9 8 1.3344 -2.3691 0.0005 10 6 2.1127 -3.5675 0.0005 11 1 3.0535 -3.4103 -0.5268 12 6 2.3771 -4.0421 1.4511 13 6 2.6507 -5.5560 1.2708 14 6 1.6616 -5.9907 0.1696 15 6 1.3196 -4.7264 -0.6380 16 1 0.2501 -4.5238 -0.5794 17 7 1.7233 -4.9001 -2.0397 18 1 -0.4851 0.8400 -0.0004 19 1 1.4993 -3.8800 2.0767 20 1 3.2490 -3.5392 1.8692 21 1 2.4496 -6.0930 2.1978 22 1 3.6783 -5.7244 0.9487 23 1 2.1272 -6.7332 -0.4784 24 1 0.7582 -6.4017 0.6201 25 1 1.2291 -5.6698 -2.4656 26 1 1.5868 -4.0487 -2.5635 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131382149.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:38 Heat of formation + Delta-G solvation = -48.115036 kcal Electronic energy + Delta-G solvation = -10131.423590 eV Core-core repulsion = 8209.918434 eV Total energy + Delta-G solvation = -1921.505155 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.10947 -35.05334 -32.09762 -31.51168 -27.16625 -25.78936 -24.05114 -20.14254 -19.17821 -17.61876 -15.70297 -15.28021 -14.68342 -14.16506 -13.59782 -13.34340 -12.54739 -11.93583 -11.87781 -11.17867 -11.05091 -10.87365 -10.56649 -10.34287 -10.19923 -9.90210 -9.40847 -9.05277 -8.20422 -7.92782 -5.92478 -3.55035 3.32300 3.35953 3.40309 4.33112 4.97215 5.16192 5.19912 5.42988 5.52111 5.83308 6.03023 6.10711 6.16653 6.21418 6.40864 6.45600 6.62987 6.76750 6.90748 7.00902 7.51901 7.68384 7.91328 8.46650 9.51691 10.21636 11.28814 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.072177 B = 0.012711 C = 0.011960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.842974 B = 2202.203911 C = 2340.511488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.020 3.980 3 Si 0.923 3.077 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.353 4.353 8 H 0.063 0.937 9 O -0.289 6.289 10 C 0.098 3.902 11 H 0.054 0.946 12 C -0.143 4.143 13 C -0.119 4.119 14 C -0.114 4.114 15 C 0.086 3.914 16 H 0.046 0.954 17 N -0.845 5.845 18 H 0.256 0.744 19 H 0.070 0.930 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.330 0.670 26 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.569 -8.285 -0.117 9.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.751 3.249 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.433 4.433 8 H 0.080 0.920 9 O -0.203 6.203 10 C 0.039 3.961 11 H 0.072 0.928 12 C -0.182 4.182 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.026 4.026 16 H 0.064 0.936 17 N -0.374 5.374 18 H 0.066 0.934 19 H 0.089 0.911 20 H 0.079 0.921 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.141 0.859 26 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.963 -8.311 0.180 9.210 hybrid contribution -0.344 1.051 -0.196 1.123 sum 3.619 -7.261 -0.016 8.113 Atomic orbital electron populations 1.70030 1.05378 1.25678 1.52445 1.24946 0.95653 0.97711 0.99467 0.85913 0.78870 0.82473 0.77665 1.19928 1.20946 1.20952 1.20909 0.90136 0.82720 1.49511 0.91977 1.85655 1.31779 1.10425 1.92464 1.22637 0.93856 0.86741 0.92911 0.92813 1.22976 1.01500 0.94149 0.99529 1.22217 0.98907 0.96835 0.97728 1.22106 0.98931 0.97006 0.97176 1.21981 0.97966 0.94571 0.88052 0.93596 1.58936 1.64702 1.10430 1.03345 0.93377 0.91126 0.92109 0.92404 0.92023 0.91468 0.92328 0.85888 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.25 13.67 55.48 0.76 -27.49 15 2 C 0.02 0.59 5.49 -17.51 -0.10 0.49 15 3 Si 0.92 22.39 29.55 -169.99 -5.02 17.37 15 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 15 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 7 C -0.35 -10.50 9.82 30.88 0.30 -10.20 15 8 H 0.06 1.76 7.68 -52.49 -0.40 1.36 15 9 O -0.29 -8.34 9.49 -16.51 -0.16 -8.50 15 10 C 0.10 2.24 3.03 -25.07 -0.08 2.17 15 11 H 0.05 1.26 7.79 -51.93 -0.40 0.85 15 12 C -0.14 -2.84 6.62 -24.73 -0.16 -3.00 15 13 C -0.12 -1.88 6.83 -25.07 -0.17 -2.06 15 14 C -0.11 -1.80 6.58 -25.62 -0.17 -1.97 15 15 C 0.09 1.65 3.79 -66.60 -0.25 1.39 15 16 H 0.05 0.97 8.07 -51.92 -0.42 0.55 15 17 N -0.84 -14.38 9.10 -3.72 -0.03 -14.42 15 18 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 19 H 0.07 1.47 8.14 -51.93 -0.42 1.05 15 20 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.06 0.93 8.14 -51.93 -0.42 0.50 15 23 H 0.07 0.97 7.92 -51.93 -0.41 0.56 15 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.33 4.62 9.06 -39.29 -0.36 4.27 15 26 H 0.35 6.23 9.02 -39.30 -0.35 5.88 15 LS Contribution 223.84 15.07 3.37 3.37 Total: -1.00 -32.44 223.84 -5.30 -37.75 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -3.60 Total: 5.09 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -0.62 Total: -13.17 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.72 Total: -41.91 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.16 Total: -8.50 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -32.44 -5.30 -37.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131382149.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.369 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds