Wall clock time and date at job start Mon Mar 30 2020 02:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86797 * 119.99790 * 2 1 4 4 H 1.48500 * 109.47029 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47293 * 299.99778 * 3 2 1 6 6 H 1.48501 * 109.47548 * 59.99851 * 3 2 1 7 7 C 1.38630 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00044 * 180.02562 * 7 2 1 9 9 O 1.34931 * 119.99980 * 0.02562 * 7 2 1 10 10 C 1.42898 * 116.99859 * 179.97438 * 9 7 2 11 11 H 1.08993 * 110.43870 * 328.91543 * 10 9 7 12 12 C 1.54899 * 110.48322 * 91.45306 * 10 9 7 13 13 C 1.54891 * 102.74611 * 156.62058 * 12 10 9 14 14 C 1.54266 * 104.19455 * 322.05486 * 13 12 10 15 15 C 1.53869 * 106.60029 * 23.61419 * 14 13 12 16 16 H 1.09009 * 110.03169 * 240.71589 * 15 14 13 17 17 N 1.46894 * 110.03744 * 119.28338 * 15 14 13 18 18 H 0.97001 * 120.00441 * 0.02562 * 1 2 3 19 19 H 1.08997 * 110.75810 * 38.30445 * 12 10 9 20 20 H 1.08994 * 110.75501 * 274.93020 * 12 10 9 21 21 H 1.09000 * 110.48374 * 203.37774 * 13 12 10 22 22 H 1.08997 * 110.60279 * 80.78868 * 13 12 10 23 23 H 1.09000 * 110.03049 * 142.90078 * 14 13 12 24 24 H 1.09001 * 110.03650 * 264.32561 * 14 13 12 25 25 H 1.00904 * 110.99893 * 61.45452 * 17 15 14 26 26 H 1.00893 * 111.00258 * 185.40621 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3464 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8910 2.3965 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2005 0.0010 9 8 1.3344 -2.3691 0.0005 10 6 2.1127 -3.5675 0.0005 11 1 3.0535 -3.4103 -0.5268 12 6 2.3771 -4.0421 1.4511 13 6 2.6507 -5.5560 1.2708 14 6 1.6616 -5.9907 0.1696 15 6 1.3196 -4.7264 -0.6380 16 1 0.2501 -4.5238 -0.5794 17 7 1.7233 -4.9001 -2.0397 18 1 -0.4851 0.8400 -0.0004 19 1 1.4993 -3.8800 2.0767 20 1 3.2490 -3.5392 1.8692 21 1 2.4496 -6.0930 2.1978 22 1 3.6783 -5.7244 0.9487 23 1 2.1272 -6.7332 -0.4784 24 1 0.7582 -6.4017 0.6201 25 1 1.2291 -5.6698 -2.4656 26 1 1.5868 -4.0487 -2.5635 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131382149.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:38 Heat of formation + Delta-G solvation = -72.802578 kcal Electronic energy + Delta-G solvation = -10132.494122 eV Core-core repulsion = 8209.918434 eV Total energy + Delta-G solvation = -1922.575687 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.77906 -36.98511 -33.77567 -33.49081 -28.77130 -27.44266 -26.12680 -21.67472 -20.75685 -19.74692 -17.66529 -16.79296 -16.17232 -16.02951 -15.40089 -14.79840 -14.48816 -13.79596 -13.65647 -13.05883 -12.77931 -12.40172 -12.12635 -11.97003 -11.75774 -11.56600 -11.27578 -11.09607 -10.11110 -9.66363 -8.18268 -5.86463 1.38429 1.43779 1.54703 2.32340 3.14495 3.46633 3.69838 3.75222 4.14952 4.23365 4.48965 4.54914 4.65614 4.81639 5.02102 5.07703 5.13026 5.19138 5.24746 5.29665 5.45467 6.18075 6.22588 6.60354 7.25376 8.07898 9.06875 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.072177 B = 0.012711 C = 0.011960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.842974 B = 2202.203911 C = 2340.511488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.045 4.045 3 Si 1.004 2.996 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.367 4.367 8 H 0.067 0.933 9 O -0.329 6.329 10 C 0.083 3.917 11 H 0.043 0.957 12 C -0.143 4.143 13 C -0.107 4.107 14 C -0.106 4.106 15 C 0.088 3.912 16 H 0.019 0.981 17 N -0.838 5.838 18 H 0.260 0.740 19 H 0.053 0.947 20 H 0.058 0.942 21 H 0.086 0.914 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.349 0.651 26 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.811 -9.042 0.029 10.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.237 4.237 3 Si 0.826 3.174 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.446 4.446 8 H 0.085 0.915 9 O -0.244 6.244 10 C 0.024 3.976 11 H 0.061 0.939 12 C -0.181 4.181 13 C -0.145 4.145 14 C -0.144 4.144 15 C -0.024 4.024 16 H 0.037 0.963 17 N -0.368 5.368 18 H 0.068 0.932 19 H 0.072 0.928 20 H 0.077 0.923 21 H 0.105 0.895 22 H 0.093 0.907 23 H 0.108 0.892 24 H 0.093 0.907 25 H 0.163 0.837 26 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.220 -9.117 0.321 10.510 hybrid contribution -0.730 1.206 -0.262 1.434 sum 4.489 -7.911 0.059 9.096 Atomic orbital electron populations 1.70198 1.07506 1.27030 1.53942 1.26191 0.96752 1.01924 0.98849 0.84717 0.77998 0.76688 0.77991 1.18276 1.20057 1.20131 1.21331 0.90520 0.83608 1.49165 0.91507 1.85591 1.34038 1.11867 1.92942 1.23032 0.93484 0.85851 0.95250 0.93938 1.22910 1.00647 0.97524 0.97056 1.22197 0.99689 0.93411 0.99169 1.22100 0.99917 0.95398 0.96952 1.21951 0.95809 0.95038 0.89602 0.96269 1.58932 1.64720 1.10764 1.02426 0.93164 0.92823 0.92348 0.89538 0.90695 0.89233 0.90700 0.83699 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.00 13.67 21.61 0.30 -60.71 15 2 C -0.04 -2.69 5.49 84.82 0.47 -2.22 15 3 Si 1.00 46.11 29.55 68.60 2.03 48.14 15 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 15 5 H -0.27 -12.18 7.11 99.48 0.71 -11.48 15 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 7 C -0.37 -22.26 9.82 67.91 0.67 -21.60 15 8 H 0.07 3.84 7.68 -2.91 -0.02 3.82 15 9 O -0.33 -19.62 9.49 -82.01 -0.78 -20.40 15 10 C 0.08 3.81 3.03 31.67 0.10 3.91 15 11 H 0.04 2.02 7.79 -2.39 -0.02 2.00 15 12 C -0.14 -5.61 6.62 31.89 0.21 -5.40 15 13 C -0.11 -3.07 6.83 31.67 0.22 -2.85 15 14 C -0.11 -3.03 6.58 31.32 0.21 -2.82 15 15 C 0.09 3.33 3.79 45.64 0.17 3.50 15 16 H 0.02 0.83 8.07 -2.38 -0.02 0.81 15 17 N -0.84 -27.73 9.10 -165.68 -1.51 -29.23 15 18 H 0.26 15.61 8.31 -92.71 -0.77 14.84 15 19 H 0.05 2.26 8.14 -2.39 -0.02 2.24 15 20 H 0.06 2.26 8.14 -2.39 -0.02 2.24 15 21 H 0.09 2.04 8.14 -2.39 -0.02 2.02 15 22 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 23 H 0.09 2.21 7.92 -2.39 -0.02 2.19 15 24 H 0.07 1.93 8.14 -2.39 -0.02 1.91 15 25 H 0.35 9.17 9.06 -89.69 -0.81 8.36 15 26 H 0.34 12.23 9.02 -89.70 -0.81 11.42 15 Total: -1.00 -70.91 223.84 1.62 -69.29 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -0.45 Total: 20.40 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 2.03 Total: -27.49 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -1.21 Total: -89.94 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.78 Total: -20.40 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -70.91 1.62 -69.29 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131382149.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.512 kcal (2) G-P(sol) polarization free energy of solvation -70.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds