Wall clock time and date at job start Mon Mar 30 2020 02:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86798 * 120.00005 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99873 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99432 * 3 2 1 7 7 C 1.38637 * 119.99487 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99444 * 179.97438 * 7 2 1 9 9 O 1.34925 * 120.00496 * 0.02562 * 7 2 1 10 10 C 1.42895 * 117.00202 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.01790 * 330.06455 * 10 9 7 12 12 C 1.54269 * 110.02729 * 91.45655 * 10 9 7 13 13 C 1.54896 * 104.19328 * 142.89432 * 12 10 9 14 14 C 1.54888 * 102.74988 * 322.05817 * 13 12 10 15 15 C 1.53872 * 110.03380 * 208.62140 * 10 9 7 16 16 H 1.08997 * 110.03160 * 121.43271 * 15 10 9 17 17 N 1.46901 * 110.03156 * 0.02562 * 15 10 9 18 18 H 0.97005 * 119.99693 * 0.02562 * 1 2 3 19 19 H 1.09002 * 110.48585 * 261.57031 * 12 10 9 20 20 H 1.08996 * 110.48769 * 24.08660 * 12 10 9 21 21 H 1.09001 * 110.75294 * 80.37052 * 13 12 10 22 22 H 1.09002 * 110.75320 * 203.73969 * 13 12 10 23 23 H 1.08991 * 110.48870 * 156.62214 * 14 13 12 24 24 H 1.09009 * 110.48306 * 279.13388 * 14 13 12 25 25 H 1.00902 * 110.99906 * 179.97438 * 17 15 10 26 26 H 1.00902 * 111.00302 * 303.95005 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 1.2849 2.7464 -0.0006 5 1 3.1035 1.6964 1.2124 6 1 3.1037 1.6962 -1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3343 -2.3692 0.0005 10 6 2.1125 -3.5676 0.0005 11 1 3.0600 -3.3972 -0.5105 12 6 2.3693 -4.0308 1.4495 13 6 2.2945 -5.5761 1.3731 14 6 1.1470 -5.8131 0.3603 15 6 1.3353 -4.7008 -0.6919 16 1 1.9057 -5.0812 -1.5393 17 7 0.0272 -4.2098 -1.1454 18 1 -0.4850 0.8401 -0.0004 19 1 3.3574 -3.7127 1.7822 20 1 1.5997 -3.6421 2.1163 21 1 3.2311 -5.9901 0.9996 22 1 2.0447 -5.9992 2.3461 23 1 1.2429 -6.7956 -0.1018 24 1 0.1786 -5.7164 0.8514 25 1 -0.4952 -4.9420 -1.6026 26 1 -0.4970 -3.8160 -0.3784 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131382392.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:39 Heat of formation + Delta-G solvation = -40.630759 kcal Electronic energy + Delta-G solvation = -10237.539218 eV Core-core repulsion = 8316.358606 eV Total energy + Delta-G solvation = -1921.180613 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.18187 -34.87908 -31.81462 -31.39885 -27.10635 -25.62860 -24.07292 -20.28486 -19.03852 -17.61600 -15.63337 -15.41874 -14.29193 -13.90962 -13.70789 -12.91506 -12.49597 -12.09654 -11.77003 -11.31538 -10.91928 -10.66524 -10.58352 -10.47986 -10.25255 -9.88593 -9.31451 -8.94275 -7.82923 -7.72692 -5.81415 -3.42393 3.38574 3.40654 3.43373 4.40721 5.07332 5.16825 5.20475 5.52261 5.61500 5.75591 5.91136 6.03012 6.09058 6.11575 6.29385 6.41663 6.69829 6.72765 6.92958 7.09494 7.57265 7.98477 8.34550 8.56695 9.62094 10.34418 11.39402 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.074700 B = 0.013624 C = 0.012330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.743245 B = 2054.763355 C = 2270.367389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.022 3.978 3 Si 0.920 3.080 4 H -0.285 1.285 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.355 4.355 8 H 0.057 0.943 9 O -0.265 6.265 10 C 0.096 3.904 11 H 0.041 0.959 12 C -0.147 4.147 13 C -0.121 4.121 14 C -0.158 4.158 15 C 0.093 3.907 16 H 0.072 0.928 17 N -0.819 5.819 18 H 0.255 0.745 19 H 0.056 0.944 20 H 0.072 0.928 21 H 0.060 0.940 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.320 0.680 26 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.035 -8.873 1.236 9.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.176 4.176 3 Si 0.748 3.252 4 H -0.210 1.210 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.435 4.435 8 H 0.075 0.925 9 O -0.179 6.179 10 C 0.036 3.964 11 H 0.059 0.941 12 C -0.185 4.185 13 C -0.159 4.159 14 C -0.198 4.198 15 C -0.019 4.019 16 H 0.090 0.910 17 N -0.348 5.348 18 H 0.065 0.935 19 H 0.075 0.925 20 H 0.091 0.909 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.131 0.869 26 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.102 -8.221 0.765 8.820 hybrid contribution 0.429 0.062 0.710 0.832 sum 3.532 -8.159 1.476 9.012 Atomic orbital electron populations 1.70011 1.05200 1.25560 1.52199 1.24872 0.95602 0.97421 0.99657 0.86122 0.78552 0.82324 0.78204 1.21019 1.20654 1.20572 1.20810 0.89869 0.83151 1.49623 0.92530 1.85687 1.30503 1.09537 1.92183 1.22410 0.93552 0.88127 0.92316 0.94103 1.23005 1.01466 0.93936 1.00121 1.22346 0.97995 0.97127 0.98405 1.23267 0.99057 0.99195 0.98289 1.22159 0.92487 0.92471 0.94822 0.91004 1.58440 1.04956 1.35817 1.35570 0.93482 0.92530 0.90896 0.92087 0.92402 0.92534 0.91869 0.86918 0.82975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.09 13.68 55.48 0.76 -27.33 15 2 C 0.02 0.67 5.49 -17.51 -0.10 0.57 15 3 Si 0.92 22.64 29.55 -169.99 -5.02 17.62 15 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.35 -10.60 9.81 30.88 0.30 -10.29 15 8 H 0.06 1.61 7.65 -52.49 -0.40 1.21 15 9 O -0.27 -7.54 7.96 -16.50 -0.13 -7.67 15 10 C 0.10 2.16 3.41 -25.61 -0.09 2.07 15 11 H 0.04 0.92 7.83 -51.93 -0.41 0.52 15 12 C -0.15 -2.84 6.55 -25.07 -0.16 -3.01 15 13 C -0.12 -1.84 6.91 -24.74 -0.17 -2.01 15 14 C -0.16 -2.44 6.52 -25.07 -0.16 -2.60 15 15 C 0.09 1.76 4.04 -66.59 -0.27 1.49 15 16 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 17 N -0.82 -16.39 8.58 -3.72 -0.03 -16.43 15 18 H 0.26 7.61 8.31 -40.82 -0.34 7.27 15 19 H 0.06 1.05 8.14 -51.93 -0.42 0.62 15 20 H 0.07 1.54 8.08 -51.93 -0.42 1.12 15 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.06 0.80 8.14 -51.93 -0.42 0.37 15 23 H 0.06 0.75 8.14 -51.93 -0.42 0.32 15 24 H 0.06 0.98 8.02 -51.92 -0.42 0.57 15 25 H 0.32 5.21 9.07 -39.29 -0.36 4.85 15 26 H 0.35 7.71 8.30 -39.29 -0.33 7.39 15 LS Contribution 221.78 15.07 3.34 3.34 Total: -1.00 -32.54 221.78 -5.31 -37.84 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -3.58 Total: 6.40 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -0.65 Total: -13.79 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.73 Total: -43.75 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.13 Total: -7.67 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -32.54 -5.31 -37.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131382392.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.786 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds