Wall clock time and date at job start Mon Mar 30 2020 02:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86798 * 120.00005 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99873 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99432 * 3 2 1 7 7 C 1.38637 * 119.99487 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99444 * 179.97438 * 7 2 1 9 9 O 1.34925 * 120.00496 * 0.02562 * 7 2 1 10 10 C 1.42895 * 117.00202 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.01790 * 330.06455 * 10 9 7 12 12 C 1.54269 * 110.02729 * 91.45655 * 10 9 7 13 13 C 1.54896 * 104.19328 * 142.89432 * 12 10 9 14 14 C 1.54888 * 102.74988 * 322.05817 * 13 12 10 15 15 C 1.53872 * 110.03380 * 208.62140 * 10 9 7 16 16 H 1.08997 * 110.03160 * 121.43271 * 15 10 9 17 17 N 1.46901 * 110.03156 * 0.02562 * 15 10 9 18 18 H 0.97005 * 119.99693 * 0.02562 * 1 2 3 19 19 H 1.09002 * 110.48585 * 261.57031 * 12 10 9 20 20 H 1.08996 * 110.48769 * 24.08660 * 12 10 9 21 21 H 1.09001 * 110.75294 * 80.37052 * 13 12 10 22 22 H 1.09002 * 110.75320 * 203.73969 * 13 12 10 23 23 H 1.08991 * 110.48870 * 156.62214 * 14 13 12 24 24 H 1.09009 * 110.48306 * 279.13388 * 14 13 12 25 25 H 1.00902 * 110.99906 * 179.97438 * 17 15 10 26 26 H 1.00902 * 111.00302 * 303.95005 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 1.2849 2.7464 -0.0006 5 1 3.1035 1.6964 1.2124 6 1 3.1037 1.6962 -1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3343 -2.3692 0.0005 10 6 2.1125 -3.5676 0.0005 11 1 3.0600 -3.3972 -0.5105 12 6 2.3693 -4.0308 1.4495 13 6 2.2945 -5.5761 1.3731 14 6 1.1470 -5.8131 0.3603 15 6 1.3353 -4.7008 -0.6919 16 1 1.9057 -5.0812 -1.5393 17 7 0.0272 -4.2098 -1.1454 18 1 -0.4850 0.8401 -0.0004 19 1 3.3574 -3.7127 1.7822 20 1 1.5997 -3.6421 2.1163 21 1 3.2311 -5.9901 0.9996 22 1 2.0447 -5.9992 2.3461 23 1 1.2429 -6.7956 -0.1018 24 1 0.1786 -5.7164 0.8514 25 1 -0.4952 -4.9420 -1.6026 26 1 -0.4970 -3.8160 -0.3784 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131382392.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:39 Heat of formation + Delta-G solvation = -65.074755 kcal Electronic energy + Delta-G solvation = -10238.599189 eV Core-core repulsion = 8316.358606 eV Total energy + Delta-G solvation = -1922.240584 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.80611 -36.79610 -33.62501 -33.30976 -28.69301 -27.23743 -26.20242 -21.63842 -20.70018 -19.71662 -17.36623 -17.23165 -16.09076 -15.57447 -15.27960 -14.63429 -14.11662 -13.97122 -13.41471 -13.21120 -12.73548 -12.34922 -12.22580 -11.92933 -11.79239 -11.55743 -11.18971 -10.99387 -9.98694 -9.24972 -8.07546 -5.73082 1.40131 1.47498 1.54035 2.37627 3.23315 3.57027 3.76188 3.82190 4.13471 4.26302 4.47648 4.53200 4.64782 4.80711 4.98425 5.06546 5.14951 5.18175 5.29350 5.42595 5.45941 6.27866 6.46871 6.86707 7.35369 8.22416 9.16424 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.074700 B = 0.013624 C = 0.012330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.743245 B = 2054.763355 C = 2270.367389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.042 4.042 3 Si 0.997 3.003 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.370 4.370 8 H 0.061 0.939 9 O -0.299 6.299 10 C 0.076 3.924 11 H 0.031 0.969 12 C -0.144 4.144 13 C -0.108 4.108 14 C -0.146 4.146 15 C 0.092 3.908 16 H 0.085 0.915 17 N -0.839 5.839 18 H 0.256 0.744 19 H 0.059 0.941 20 H 0.046 0.954 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.059 0.941 25 H 0.340 0.660 26 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.137 -9.800 1.374 10.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.235 4.235 3 Si 0.820 3.180 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.449 4.449 8 H 0.079 0.921 9 O -0.213 6.213 10 C 0.017 3.983 11 H 0.049 0.951 12 C -0.182 4.182 13 C -0.146 4.146 14 C -0.186 4.186 15 C -0.020 4.020 16 H 0.103 0.897 17 N -0.369 5.369 18 H 0.065 0.935 19 H 0.077 0.923 20 H 0.065 0.935 21 H 0.102 0.898 22 H 0.098 0.902 23 H 0.109 0.891 24 H 0.078 0.922 25 H 0.153 0.847 26 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.226 -9.194 0.896 10.159 hybrid contribution 0.110 0.265 0.645 0.706 sum 4.337 -8.930 1.541 10.046 Atomic orbital electron populations 1.70190 1.07177 1.26651 1.53726 1.26050 0.96719 1.01503 0.99260 0.84943 0.77287 0.76815 0.78919 1.20496 1.19186 1.19411 1.21263 0.90290 0.84298 1.49098 0.92126 1.85628 1.32406 1.10676 1.92633 1.22881 0.93385 0.87373 0.94695 0.95130 1.22889 1.00617 0.97408 0.97321 1.22333 0.99089 0.93432 0.99746 1.23158 0.98980 0.99287 0.97168 1.22206 0.91567 0.92119 0.96123 0.89704 1.58376 1.05654 1.37350 1.35511 0.93504 0.92257 0.93466 0.89834 0.90215 0.89115 0.92210 0.84664 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.39 13.68 21.61 0.30 -60.09 15 2 C -0.04 -2.56 5.49 84.83 0.47 -2.10 15 3 Si 1.00 46.70 29.55 68.60 2.03 48.73 15 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 5 H -0.27 -11.79 7.11 99.48 0.71 -11.09 15 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 7 C -0.37 -22.49 9.81 67.92 0.67 -21.82 15 8 H 0.06 3.50 7.65 -2.91 -0.02 3.47 15 9 O -0.30 -17.41 7.96 -81.94 -0.65 -18.06 15 10 C 0.08 3.42 3.41 31.32 0.11 3.53 15 11 H 0.03 1.40 7.83 -2.39 -0.02 1.38 15 12 C -0.14 -5.48 6.55 31.67 0.21 -5.28 15 13 C -0.11 -2.96 6.91 31.89 0.22 -2.74 15 14 C -0.15 -4.08 6.52 31.67 0.21 -3.87 15 15 C 0.09 3.35 4.04 45.64 0.18 3.53 15 16 H 0.08 2.83 8.14 -2.39 -0.02 2.81 15 17 N -0.84 -33.45 8.58 -165.68 -1.42 -34.87 15 18 H 0.26 15.59 8.31 -92.70 -0.77 14.81 15 19 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 20 H 0.05 2.02 8.08 -2.39 -0.02 2.00 15 21 H 0.08 1.95 8.14 -2.39 -0.02 1.94 15 22 H 0.08 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.09 1.97 8.14 -2.39 -0.02 1.95 15 24 H 0.06 1.72 8.02 -2.38 -0.02 1.70 15 25 H 0.34 10.75 9.07 -89.69 -0.81 9.94 15 26 H 0.34 15.17 8.30 -89.69 -0.74 14.43 15 Total: -1.00 -70.96 221.78 1.92 -69.04 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -0.38 Total: 24.00 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 2.06 Total: -28.74 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -1.13 Total: -94.96 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.65 Total: -18.06 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -70.96 1.92 -69.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131382392.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.965 kcal (2) G-P(sol) polarization free energy of solvation -70.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds