Wall clock time and date at job start Mon Mar 30 2020 02:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.55191 * 2 1 4 4 O 1.44375 * 110.62127 * 122.88098 * 2 1 3 5 5 C 1.43745 * 106.97795 * 158.56080 * 4 2 1 6 6 C 1.54099 * 107.29477 * 333.48679 * 5 4 2 7 7 C 1.54986 * 104.25168 * 2.16702 * 6 5 4 8 8 H 1.08998 * 111.05570 * 138.88384 * 7 6 5 9 9 N 1.46505 * 110.84003 * 262.54489 * 7 6 5 10 10 C 1.36943 * 119.99297 * 267.56578 * 9 7 6 11 11 H 1.07992 * 120.00251 * 0.02562 * 10 9 7 12 12 C 1.38813 * 119.99404 * 179.97438 * 10 9 7 13 13 N 1.31617 * 120.00456 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99638 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46683 * 90.00712 * 14 12 10 16 16 H 1.48496 * 109.47221 * 209.99972 * 14 12 10 17 17 H 1.48495 * 109.47300 * 330.00656 * 14 12 10 18 18 H 1.09002 * 109.47153 * 300.69783 * 1 2 3 19 19 H 1.09001 * 109.46832 * 180.69974 * 1 2 3 20 20 H 1.09004 * 109.47261 * 60.69955 * 1 2 3 21 21 H 1.09004 * 109.87851 * 92.91019 * 5 4 2 22 22 H 1.08999 * 109.88192 * 214.06278 * 5 4 2 23 23 H 1.09006 * 110.48620 * 120.70312 * 6 5 4 24 24 H 1.08997 * 110.49086 * 243.21823 * 6 5 4 25 25 H 0.96989 * 120.00530 * 87.57214 * 9 7 6 26 26 H 0.96998 * 119.99962 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 8 2.0384 -0.7336 1.1348 5 6 3.3840 -1.1242 0.8134 6 6 3.4795 -1.2178 -0.7218 7 6 2.0759 -0.7875 -1.2184 8 1 2.1508 -0.1444 -2.0953 9 7 1.2414 -1.9581 -1.5006 10 6 1.2060 -2.4850 -2.7641 11 1 1.7934 -2.0379 -3.5523 12 6 0.4157 -3.5944 -3.0314 13 7 -0.2999 -4.1396 -2.0708 14 14 0.3668 -4.3128 -4.7551 15 1 1.4264 -5.3444 -4.8916 16 1 -0.9611 -4.9324 -4.9957 17 1 0.5965 -3.2329 -5.7482 18 1 -0.3633 0.5246 0.8837 19 1 -0.3633 -1.0276 0.0126 20 1 -0.3634 0.5029 -0.8962 21 1 4.0854 -0.3764 1.1835 22 1 3.6046 -2.0945 1.2583 23 1 4.2407 -0.5347 -1.0990 24 1 3.6999 -2.2401 -1.0288 25 1 0.7139 -2.3598 -0.7927 26 1 -0.8524 -4.9147 -2.2577 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133469455.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:25 Heat of formation + Delta-G solvation = -38.949763 kcal Electronic energy + Delta-G solvation = -10282.553201 eV Core-core repulsion = 8361.445482 eV Total energy + Delta-G solvation = -1921.107719 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.90353 -34.22334 -31.60828 -30.82887 -28.85807 -25.16808 -23.36590 -21.09388 -19.64194 -17.45673 -15.62189 -15.23010 -14.63631 -14.24506 -13.68741 -13.01922 -12.51193 -11.77496 -11.65269 -11.44312 -10.95497 -10.80216 -10.62644 -10.45691 -10.22092 -9.92764 -9.62906 -9.14131 -8.85114 -6.96620 -5.77155 -3.06416 3.42732 3.47803 3.49711 4.45291 4.59505 5.32453 5.47600 5.49904 5.62524 5.69400 5.78867 6.01933 6.17731 6.21241 6.35087 6.47611 6.51945 6.63450 6.92047 6.97408 7.54162 7.69317 8.41280 9.52569 10.10293 10.46345 11.45082 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.068505 B = 0.013824 C = 0.012918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.629155 B = 2024.990249 C = 2167.067342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.060 3.940 3 H 0.060 0.940 4 O -0.379 6.379 5 C 0.055 3.945 6 C -0.184 4.184 7 C 0.152 3.848 8 H 0.066 0.934 9 N -0.711 5.711 10 C -0.243 4.243 11 H 0.070 0.930 12 C -0.012 4.012 13 N -0.930 5.930 14 Si 0.907 3.093 15 H -0.290 1.290 16 H -0.291 1.291 17 H -0.282 1.282 18 H 0.046 0.954 19 H 0.076 0.924 20 H 0.066 0.934 21 H 0.043 0.957 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.389 0.611 26 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.657 6.944 2.679 8.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.002 3.998 3 H 0.077 0.923 4 O -0.299 6.299 5 C -0.022 4.022 6 C -0.225 4.225 7 C 0.040 3.960 8 H 0.083 0.917 9 N -0.352 5.352 10 C -0.374 4.374 11 H 0.088 0.912 12 C -0.208 4.208 13 N -0.578 5.578 14 Si 0.738 3.262 15 H -0.217 1.217 16 H -0.218 1.218 17 H -0.208 1.208 18 H 0.065 0.935 19 H 0.095 0.905 20 H 0.085 0.915 21 H 0.062 0.938 22 H 0.092 0.908 23 H 0.077 0.923 24 H 0.100 0.900 25 H 0.224 0.776 26 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.522 6.839 2.683 8.627 hybrid contribution 0.082 -0.596 -0.879 1.065 sum 4.605 6.243 1.805 7.964 Atomic orbital electron populations 1.21624 0.93094 1.03911 1.00688 1.23461 0.95656 0.94298 0.86379 0.92256 1.88827 1.27945 1.73810 1.39297 1.22974 0.84325 0.99000 0.95947 1.23760 1.00631 1.03082 0.95013 1.21723 0.89154 0.90171 0.94973 0.91651 1.42383 1.51876 1.30939 1.09986 1.19265 1.22081 1.08797 0.87304 0.91166 1.24760 0.99740 0.98700 0.97618 1.69674 1.32219 1.24633 1.31250 0.86188 0.76921 0.79002 0.84041 1.21749 1.21751 1.20766 0.93492 0.90493 0.91519 0.93842 0.90818 0.92333 0.90034 0.77568 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.28 37.16 0.34 -2.14 15 2 C 0.06 1.12 3.82 -25.67 -0.10 1.02 15 3 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 4 O -0.38 -7.49 11.23 -35.23 -0.40 -7.89 15 5 C 0.05 0.94 7.70 37.73 0.29 1.23 15 6 C -0.18 -3.37 6.75 -25.11 -0.17 -3.54 15 7 C 0.15 3.13 3.54 -65.82 -0.23 2.90 15 8 H 0.07 1.31 8.09 -51.93 -0.42 0.89 15 9 N -0.71 -18.08 4.52 -51.39 -0.23 -18.31 15 10 C -0.24 -6.76 9.96 -15.06 -0.15 -6.91 15 11 H 0.07 1.88 7.83 -52.49 -0.41 1.47 15 12 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 15 13 N -0.93 -28.23 13.06 55.49 0.72 -27.51 15 14 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 15 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 15 16 H -0.29 -7.24 7.11 56.52 0.40 -6.83 15 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 18 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 19 H 0.08 1.64 6.49 -51.93 -0.34 1.30 15 20 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.07 1.24 8.14 -51.93 -0.42 0.82 15 23 H 0.06 0.92 8.14 -51.93 -0.42 0.49 15 24 H 0.08 1.66 8.07 -51.93 -0.42 1.24 15 25 H 0.39 10.69 6.41 -40.82 -0.26 10.43 15 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 LS Contribution 220.30 15.07 3.32 3.32 Total: -1.00 -29.98 220.30 -5.24 -35.21 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -3.52 Total: 5.72 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -0.11 Total: -7.88 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.49 Total: -45.82 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.40 Total: -7.89 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -29.98 -5.24 -35.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133469455.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.736 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds