Wall clock time and date at job start Mon Mar 30 2020 02:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.55191 * 2 1 4 4 O 1.44375 * 110.62127 * 122.88098 * 2 1 3 5 5 C 1.43745 * 106.97795 * 158.56080 * 4 2 1 6 6 C 1.54099 * 107.29477 * 333.48679 * 5 4 2 7 7 C 1.54986 * 104.25168 * 2.16702 * 6 5 4 8 8 H 1.08998 * 111.05570 * 138.88384 * 7 6 5 9 9 N 1.46505 * 110.84003 * 262.54489 * 7 6 5 10 10 C 1.36943 * 119.99297 * 267.56578 * 9 7 6 11 11 H 1.07992 * 120.00251 * 0.02562 * 10 9 7 12 12 C 1.38813 * 119.99404 * 179.97438 * 10 9 7 13 13 N 1.31617 * 120.00456 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99638 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46683 * 90.00712 * 14 12 10 16 16 H 1.48496 * 109.47221 * 209.99972 * 14 12 10 17 17 H 1.48495 * 109.47300 * 330.00656 * 14 12 10 18 18 H 1.09002 * 109.47153 * 300.69783 * 1 2 3 19 19 H 1.09001 * 109.46832 * 180.69974 * 1 2 3 20 20 H 1.09004 * 109.47261 * 60.69955 * 1 2 3 21 21 H 1.09004 * 109.87851 * 92.91019 * 5 4 2 22 22 H 1.08999 * 109.88192 * 214.06278 * 5 4 2 23 23 H 1.09006 * 110.48620 * 120.70312 * 6 5 4 24 24 H 1.08997 * 110.49086 * 243.21823 * 6 5 4 25 25 H 0.96989 * 120.00530 * 87.57214 * 9 7 6 26 26 H 0.96998 * 119.99962 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 8 2.0384 -0.7336 1.1348 5 6 3.3840 -1.1242 0.8134 6 6 3.4795 -1.2178 -0.7218 7 6 2.0759 -0.7875 -1.2184 8 1 2.1508 -0.1444 -2.0953 9 7 1.2414 -1.9581 -1.5006 10 6 1.2060 -2.4850 -2.7641 11 1 1.7934 -2.0379 -3.5523 12 6 0.4157 -3.5944 -3.0314 13 7 -0.2999 -4.1396 -2.0708 14 14 0.3668 -4.3128 -4.7551 15 1 1.4264 -5.3444 -4.8916 16 1 -0.9611 -4.9324 -4.9957 17 1 0.5965 -3.2329 -5.7482 18 1 -0.3633 0.5246 0.8837 19 1 -0.3633 -1.0276 0.0126 20 1 -0.3634 0.5029 -0.8962 21 1 4.0854 -0.3764 1.1835 22 1 3.6046 -2.0945 1.2583 23 1 4.2407 -0.5347 -1.0990 24 1 3.6999 -2.2401 -1.0288 25 1 0.7139 -2.3598 -0.7927 26 1 -0.8524 -4.9147 -2.2577 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133469455.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:25 Heat of formation + Delta-G solvation = -59.805802 kcal Electronic energy + Delta-G solvation = -10283.457587 eV Core-core repulsion = 8361.445482 eV Total energy + Delta-G solvation = -1922.012105 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.40944 -36.10906 -33.49736 -32.27887 -30.68613 -26.80582 -25.31505 -22.53547 -21.23739 -19.45668 -17.28362 -16.84887 -16.22755 -15.92532 -15.40134 -14.91972 -14.13436 -13.31849 -13.21146 -13.09494 -12.87091 -12.63638 -12.27190 -12.07020 -12.03204 -11.60970 -11.41322 -11.00985 -10.46673 -9.00792 -7.93611 -5.22695 1.47461 1.49085 1.57598 2.55792 3.04135 3.37514 3.86927 3.97881 4.05521 4.27917 4.32135 4.52472 4.67044 4.77908 4.84663 5.02014 5.07361 5.14710 5.37482 5.45983 5.51735 6.11464 6.28152 7.33740 8.09742 8.33685 9.29842 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.068505 B = 0.013824 C = 0.012918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.629155 B = 2024.990249 C = 2167.067342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.065 3.935 3 H 0.097 0.903 4 O -0.402 6.402 5 C 0.053 3.947 6 C -0.176 4.176 7 C 0.136 3.864 8 H 0.073 0.927 9 N -0.724 5.724 10 C -0.241 4.241 11 H 0.079 0.921 12 C -0.077 4.077 13 N -0.970 5.970 14 Si 0.974 3.026 15 H -0.289 1.289 16 H -0.297 1.297 17 H -0.267 1.267 18 H 0.069 0.931 19 H 0.038 0.962 20 H 0.072 0.928 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.054 0.946 25 H 0.374 0.626 26 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.833 8.399 2.324 10.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.114 0.886 4 O -0.322 6.322 5 C -0.024 4.024 6 C -0.216 4.216 7 C 0.026 3.974 8 H 0.091 0.909 9 N -0.364 5.364 10 C -0.373 4.373 11 H 0.097 0.903 12 C -0.269 4.269 13 N -0.621 5.621 14 Si 0.803 3.197 15 H -0.216 1.216 16 H -0.224 1.224 17 H -0.192 1.192 18 H 0.088 0.912 19 H 0.057 0.943 20 H 0.091 0.909 21 H 0.098 0.902 22 H 0.088 0.912 23 H 0.111 0.889 24 H 0.073 0.927 25 H 0.207 0.793 26 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.743 8.341 2.323 10.391 hybrid contribution -0.228 -0.968 -0.724 1.230 sum 5.515 7.373 1.599 9.345 Atomic orbital electron populations 1.21581 0.93520 1.01804 1.02089 1.23529 0.95456 0.95450 0.84802 0.88554 1.88807 1.29284 1.74343 1.39734 1.23127 0.84002 1.00181 0.95057 1.23625 0.99834 1.02223 0.95953 1.22065 0.89818 0.89027 0.96512 0.90877 1.42539 1.52684 1.32331 1.08849 1.19675 1.20865 1.08310 0.88402 0.90342 1.25584 1.00250 0.99715 1.01365 1.69844 1.33658 1.25267 1.33325 0.85128 0.76310 0.78313 0.79917 1.21637 1.22386 1.19194 0.91236 0.94295 0.90938 0.90173 0.91177 0.88934 0.92739 0.79266 0.94103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 9.28 71.98 0.67 -4.04 15 2 C 0.07 2.26 3.82 31.28 0.12 2.38 15 3 H 0.10 2.67 8.14 -2.38 -0.02 2.65 15 4 O -0.40 -15.06 11.23 -148.98 -1.67 -16.73 15 5 C 0.05 1.68 7.70 72.35 0.56 2.24 15 6 C -0.18 -6.05 6.75 31.65 0.21 -5.83 15 7 C 0.14 5.37 3.54 46.35 0.16 5.53 15 8 H 0.07 2.76 8.09 -2.39 -0.02 2.74 15 9 N -0.72 -36.95 4.52 -316.50 -1.43 -38.38 15 10 C -0.24 -13.34 9.96 84.03 0.84 -12.50 15 11 H 0.08 4.12 7.83 -2.91 -0.02 4.10 15 12 C -0.08 -4.44 5.50 84.86 0.47 -3.98 15 13 N -0.97 -60.32 13.06 21.65 0.28 -60.04 15 14 Si 0.97 46.24 29.55 68.60 2.03 48.27 15 15 H -0.29 -13.55 7.11 99.48 0.71 -12.84 15 16 H -0.30 -14.26 7.11 99.48 0.71 -13.56 15 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 18 H 0.07 2.11 8.14 -2.39 -0.02 2.09 15 19 H 0.04 1.67 6.49 -2.39 -0.02 1.66 15 20 H 0.07 2.44 8.14 -2.38 -0.02 2.42 15 21 H 0.08 2.00 8.14 -2.38 -0.02 1.98 15 22 H 0.07 2.26 8.14 -2.39 -0.02 2.24 15 23 H 0.09 2.54 8.14 -2.38 -0.02 2.52 15 24 H 0.05 2.16 8.07 -2.39 -0.02 2.14 15 25 H 0.37 21.10 6.41 -92.72 -0.59 20.51 15 26 H 0.25 15.09 8.31 -92.71 -0.77 14.32 15 Total: -1.00 -64.06 220.30 2.80 -61.27 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.56 Total: 21.81 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 3.03 Total: -16.20 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -1.15 Total: -98.42 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -1.67 Total: -16.73 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -64.06 2.80 -61.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133469455.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.462 kcal (2) G-P(sol) polarization free energy of solvation -64.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds