Wall clock time and date at job start Mon Mar 30 2020 02:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.41469 * 2 1 4 4 O 1.44426 * 110.36764 * 237.69772 * 2 1 3 5 5 C 1.44428 * 105.27224 * 200.65408 * 4 2 1 6 6 C 1.54794 * 104.85732 * 40.45869 * 5 4 2 7 7 C 1.54477 * 110.37471 * 122.31395 * 2 1 3 8 8 H 1.09002 * 110.51371 * 24.16385 * 7 2 1 9 9 N 1.46504 * 110.50983 * 261.58941 * 7 2 1 10 10 C 1.36940 * 119.99759 * 156.90441 * 9 7 2 11 11 H 1.07997 * 119.99707 * 0.02562 * 10 9 7 12 12 C 1.38810 * 119.99714 * 180.02562 * 10 9 7 13 13 N 1.31620 * 120.00128 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99828 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47494 * 89.99724 * 14 12 10 16 16 H 1.48507 * 109.47138 * 209.99679 * 14 12 10 17 17 H 1.48503 * 109.47382 * 329.99491 * 14 12 10 18 18 H 1.09000 * 109.46805 * 297.68045 * 1 2 3 19 19 H 1.08988 * 109.47753 * 57.68727 * 1 2 3 20 20 H 1.09003 * 109.46791 * 177.68838 * 1 2 3 21 21 H 1.08996 * 110.37696 * 159.34250 * 5 4 2 22 22 H 1.09002 * 110.37347 * 281.56856 * 5 4 2 23 23 H 1.09000 * 110.61457 * 217.51047 * 6 5 4 24 24 H 1.08999 * 110.55754 * 94.70081 * 6 5 4 25 25 H 0.96996 * 119.99779 * 336.91126 * 9 7 2 26 26 H 0.97001 * 120.00029 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0327 -0.7235 -1.1444 5 6 3.3873 -1.0870 -0.7997 6 6 3.3194 -1.5055 0.6890 7 6 2.0679 -0.7741 1.2239 8 1 1.3277 -1.4921 1.5771 9 7 2.4347 0.1532 2.2971 10 6 2.4781 -0.2835 3.5942 11 1 2.2422 -1.3116 3.8260 12 6 2.8251 0.5952 4.6112 13 7 3.1121 1.8483 4.3287 14 14 2.8850 -0.0007 6.3805 15 1 4.2480 -0.5036 6.6877 16 1 2.5549 1.1236 7.2929 17 1 1.8995 -1.0957 6.5677 18 1 -0.3633 0.4774 0.9101 19 1 -0.3634 0.5492 -0.8684 20 1 -0.3633 -1.0269 -0.0415 21 1 3.7242 -1.9221 -1.4139 22 1 4.0528 -0.2328 -0.9242 23 1 4.2113 -1.1755 1.2215 24 1 3.1979 -2.5851 0.7780 25 1 2.6468 1.0765 2.0888 26 1 3.3550 2.4623 5.0393 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133469677.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:26 Heat of formation + Delta-G solvation = -62.282945 kcal Electronic energy + Delta-G solvation = -10153.381698 eV Core-core repulsion = 8231.262176 eV Total energy + Delta-G solvation = -1922.119522 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.42189 -36.27124 -33.55663 -32.32449 -30.69388 -26.84352 -24.98435 -22.90727 -21.51667 -19.21643 -17.46671 -16.64706 -16.41008 -16.19364 -15.25266 -14.61475 -14.24749 -13.68106 -13.27596 -13.05887 -12.93129 -12.66716 -12.26272 -12.15452 -12.06982 -11.67895 -11.47840 -10.96116 -10.69640 -9.05572 -7.96911 -5.26919 1.47665 1.48902 1.57515 2.53830 2.98466 3.35374 3.80789 3.93056 4.08171 4.18665 4.25018 4.46696 4.55438 4.72525 4.85125 4.97611 5.08986 5.15955 5.24584 5.36762 5.48689 5.90898 6.25201 7.30596 8.02688 8.27555 9.26322 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.072442 B = 0.012508 C = 0.011855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.423743 B = 2238.006821 C = 2361.209663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.066 3.934 3 H 0.056 0.944 4 O -0.386 6.386 5 C 0.050 3.950 6 C -0.175 4.175 7 C 0.143 3.857 8 H 0.059 0.941 9 N -0.728 5.728 10 C -0.243 4.243 11 H 0.076 0.924 12 C -0.074 4.074 13 N -0.969 5.969 14 Si 0.974 3.026 15 H -0.287 1.287 16 H -0.295 1.295 17 H -0.269 1.269 18 H 0.065 0.935 19 H 0.072 0.928 20 H 0.068 0.932 21 H 0.113 0.887 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.373 0.627 26 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.914 -5.494 -7.545 9.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.074 0.926 4 O -0.305 6.305 5 C -0.027 4.027 6 C -0.216 4.216 7 C 0.034 3.966 8 H 0.077 0.923 9 N -0.369 5.369 10 C -0.374 4.374 11 H 0.094 0.906 12 C -0.266 4.266 13 N -0.619 5.619 14 Si 0.803 3.197 15 H -0.214 1.214 16 H -0.222 1.222 17 H -0.194 1.194 18 H 0.084 0.916 19 H 0.091 0.909 20 H 0.087 0.913 21 H 0.131 0.869 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.206 0.794 26 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.070 -5.660 -7.599 9.698 hybrid contribution 0.489 0.384 1.213 1.363 sum -1.581 -5.275 -6.386 8.432 Atomic orbital electron populations 1.21680 0.91785 1.03073 1.02506 1.23186 0.96455 0.94870 0.84724 0.92579 1.89032 1.28231 1.74779 1.38488 1.23484 0.83831 1.00332 0.95012 1.23635 1.00312 1.01189 0.96456 1.21825 0.94584 0.91910 0.88330 0.92330 1.42531 1.82104 1.09667 1.02584 1.19604 1.37784 0.95386 0.84671 0.90594 1.25571 1.02943 0.95945 1.02126 1.69817 1.54723 1.04661 1.32714 0.85133 0.77808 0.76939 0.79826 1.21417 1.22185 1.19385 0.91645 0.90890 0.91345 0.86941 0.92658 0.91937 0.90478 0.79440 0.93933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.52 71.98 0.69 -3.41 15 2 C 0.07 2.37 3.64 31.10 0.11 2.48 15 3 H 0.06 2.14 7.75 -2.39 -0.02 2.12 15 4 O -0.39 -13.15 11.34 -148.98 -1.69 -14.84 15 5 C 0.05 1.52 7.64 72.59 0.55 2.07 15 6 C -0.18 -6.24 6.90 31.72 0.22 -6.03 15 7 C 0.14 5.82 3.30 46.01 0.15 5.97 15 8 H 0.06 2.41 7.83 -2.39 -0.02 2.39 15 9 N -0.73 -36.79 5.11 -318.13 -1.62 -38.41 15 10 C -0.24 -13.40 9.97 84.03 0.84 -12.56 15 11 H 0.08 4.03 7.83 -2.91 -0.02 4.01 15 12 C -0.07 -4.19 5.50 84.86 0.47 -3.72 15 13 N -0.97 -58.92 13.06 21.65 0.28 -58.63 15 14 Si 0.97 45.74 29.55 68.60 2.03 47.77 15 15 H -0.29 -13.26 7.11 99.48 0.71 -12.56 15 16 H -0.30 -13.96 7.11 99.48 0.71 -13.26 15 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 18 H 0.06 2.12 8.14 -2.39 -0.02 2.10 15 19 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 20 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 21 H 0.11 2.71 8.14 -2.39 -0.02 2.69 15 22 H 0.06 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.06 2.48 7.96 -2.39 -0.02 2.46 15 24 H 0.08 2.46 8.14 -2.39 -0.02 2.44 15 25 H 0.37 20.24 7.56 -92.71 -0.70 19.54 15 26 H 0.25 14.85 8.31 -92.71 -0.77 14.08 15 Total: -1.00 -61.50 222.95 2.48 -59.02 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.45 Total: 20.29 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: 3.03 Total: -15.20 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -1.34 Total: -97.04 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -1.69 Total: -14.84 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -61.50 2.48 -59.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133469677.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.263 kcal (2) G-P(sol) polarization free energy of solvation -61.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds