Wall clock time and date at job start Mon Mar 30 2020 02:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.32779 * 2 1 4 4 O 1.44415 * 110.37805 * 237.62781 * 2 1 3 5 5 C 1.44642 * 105.37338 * 200.73667 * 4 2 1 6 6 C 1.54477 * 104.69773 * 40.34325 * 5 4 2 7 7 C 1.54478 * 110.37213 * 122.24458 * 2 1 3 8 8 H 1.08999 * 110.51553 * 261.45690 * 7 2 1 9 9 N 1.46498 * 110.62817 * 24.11063 * 7 2 1 10 10 C 1.36939 * 120.00235 * 201.16429 * 9 7 2 11 11 H 1.07996 * 119.99856 * 359.97438 * 10 9 7 12 12 C 1.38815 * 119.99947 * 180.02562 * 10 9 7 13 13 N 1.31618 * 120.00084 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99835 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47043 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47178 * 119.99862 * 14 12 10 17 17 H 1.48505 * 109.47286 * 240.00281 * 14 12 10 18 18 H 1.09000 * 109.47342 * 297.74836 * 1 2 3 19 19 H 1.09003 * 109.47259 * 57.75736 * 1 2 3 20 20 H 1.09006 * 109.46692 * 177.75301 * 1 2 3 21 21 H 1.09006 * 110.33613 * 281.58701 * 5 4 2 22 22 H 1.09000 * 110.51087 * 159.18466 * 5 4 2 23 23 H 1.09002 * 110.51371 * 217.47805 * 6 5 4 24 24 H 1.08994 * 110.51108 * 94.90453 * 6 5 4 25 25 H 0.97002 * 120.00071 * 21.16743 * 9 7 2 26 26 H 0.96998 * 119.99891 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 8 2.0328 -0.7248 -1.1434 5 6 3.3890 -1.0912 -0.7990 6 6 3.3178 -1.5049 0.6877 7 6 2.0677 -0.7726 1.2248 8 1 2.3429 -0.0817 2.0217 9 7 1.0742 -1.7369 1.7037 10 6 1.1396 -2.2066 2.9883 11 1 1.9238 -1.8664 3.6484 12 6 0.1985 -3.1207 3.4419 13 7 -0.7564 -3.5364 2.6370 14 14 0.2880 -3.7619 5.1941 15 1 1.4462 -3.1442 5.8886 16 1 -0.9634 -3.4131 5.9134 17 1 0.4523 -5.2377 5.1734 18 1 -0.3634 0.4785 0.9095 19 1 -0.3634 0.5483 -0.8692 20 1 -0.3633 -1.0270 -0.0403 21 1 4.0554 -0.2376 -0.9239 22 1 3.7253 -1.9287 -1.4102 23 1 4.2109 -1.1758 1.2189 24 1 3.1966 -2.5842 0.7783 25 1 0.3701 -2.0428 1.1107 26 1 -1.4142 -4.1748 2.9540 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133470068.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:29 Heat of formation + Delta-G solvation = -35.514991 kcal Electronic energy + Delta-G solvation = -10271.110634 eV Core-core repulsion = 8350.151858 eV Total energy + Delta-G solvation = -1920.958776 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.92987 -34.32689 -31.61923 -30.84129 -28.75064 -25.14116 -23.35514 -21.38227 -19.43666 -17.48940 -15.43083 -15.30362 -14.87725 -14.28900 -13.64486 -13.11092 -12.31895 -11.78990 -11.64662 -11.58222 -10.94508 -10.81164 -10.60606 -10.35814 -10.19778 -9.92692 -9.60727 -9.24071 -8.88574 -6.96166 -5.77258 -3.06216 3.42619 3.48149 3.50521 4.44603 4.58626 5.34307 5.46148 5.50465 5.59788 5.66746 5.75408 5.99396 6.13470 6.22276 6.32111 6.48207 6.52727 6.64100 6.91229 6.95662 7.47463 7.70373 8.41724 9.52886 10.10644 10.46221 11.45346 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.071438 B = 0.013678 C = 0.012511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.856380 B = 2046.616224 C = 2237.498754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.062 3.938 3 H 0.060 0.940 4 O -0.379 6.379 5 C 0.048 3.952 6 C -0.180 4.180 7 C 0.150 3.850 8 H 0.059 0.941 9 N -0.716 5.716 10 C -0.241 4.241 11 H 0.070 0.930 12 C -0.013 4.013 13 N -0.931 5.931 14 Si 0.907 3.093 15 H -0.281 1.281 16 H -0.291 1.291 17 H -0.292 1.292 18 H 0.071 0.929 19 H 0.046 0.954 20 H 0.073 0.927 21 H 0.047 0.953 22 H 0.080 0.920 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.389 0.611 26 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.603 5.819 -3.917 8.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.004 3.996 3 H 0.078 0.922 4 O -0.298 6.298 5 C -0.029 4.029 6 C -0.221 4.221 7 C 0.038 3.962 8 H 0.077 0.923 9 N -0.359 5.359 10 C -0.372 4.372 11 H 0.088 0.912 12 C -0.209 4.209 13 N -0.579 5.579 14 Si 0.738 3.262 15 H -0.206 1.206 16 H -0.218 1.218 17 H -0.219 1.219 18 H 0.090 0.910 19 H 0.065 0.935 20 H 0.092 0.908 21 H 0.065 0.935 22 H 0.099 0.901 23 H 0.079 0.921 24 H 0.100 0.900 25 H 0.226 0.774 26 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.496 5.725 -3.924 8.853 hybrid contribution 0.042 -0.530 0.975 1.111 sum 5.538 5.195 -2.948 8.146 Atomic orbital electron populations 1.21639 0.93052 1.03531 1.01078 1.23271 0.95874 0.94421 0.86059 0.92215 1.89108 1.27208 1.74708 1.38773 1.23315 0.84564 0.98602 0.96441 1.23769 1.00124 1.03371 0.94811 1.21543 0.89291 0.91503 0.93821 0.92307 1.42598 1.31533 1.49369 1.12403 1.19308 1.09663 1.19496 0.88783 0.91163 1.24756 0.97892 1.00123 0.98150 1.69677 1.17379 1.35916 1.34950 0.86117 0.77180 0.78459 0.84416 1.20594 1.21849 1.21876 0.91034 0.93477 0.90781 0.93450 0.90137 0.92103 0.90029 0.77433 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.90 37.16 0.33 -2.19 15 2 C 0.06 1.15 3.89 -25.96 -0.10 1.05 15 3 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 4 O -0.38 -7.31 11.35 -35.23 -0.40 -7.71 15 5 C 0.05 0.79 7.65 37.93 0.29 1.08 15 6 C -0.18 -3.34 6.87 -25.16 -0.17 -3.51 15 7 C 0.15 3.11 3.61 -66.36 -0.24 2.87 15 8 H 0.06 1.19 8.11 -51.93 -0.42 0.77 15 9 N -0.72 -18.27 4.55 -51.91 -0.24 -18.50 15 10 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 15 11 H 0.07 1.90 7.83 -52.49 -0.41 1.49 15 12 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 15 13 N -0.93 -28.26 13.06 55.49 0.72 -27.53 15 14 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 15 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 15 17 H -0.29 -7.26 7.11 56.52 0.40 -6.86 15 18 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 19 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.07 1.57 6.24 -51.93 -0.32 1.24 15 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 22 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.08 1.71 7.96 -51.93 -0.41 1.30 15 25 H 0.39 10.57 5.58 -40.82 -0.23 10.34 15 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 LS Contribution 219.10 15.07 3.30 3.30 Total: -1.00 -30.21 219.10 -5.24 -35.45 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -3.47 Total: 5.66 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -0.14 Total: -8.06 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.49 Total: -46.04 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.40 Total: -7.71 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -30.21 -5.24 -35.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133470068.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.068 kcal (2) G-P(sol) polarization free energy of solvation -30.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds