Wall clock time and date at job start Mon Mar 30 2020 02:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.32779 * 2 1 4 4 O 1.44415 * 110.37805 * 237.62781 * 2 1 3 5 5 C 1.44642 * 105.37338 * 200.73667 * 4 2 1 6 6 C 1.54477 * 104.69773 * 40.34325 * 5 4 2 7 7 C 1.54478 * 110.37213 * 122.24458 * 2 1 3 8 8 H 1.08999 * 110.51553 * 261.45690 * 7 2 1 9 9 N 1.46498 * 110.62817 * 24.11063 * 7 2 1 10 10 C 1.36939 * 120.00235 * 201.16429 * 9 7 2 11 11 H 1.07996 * 119.99856 * 359.97438 * 10 9 7 12 12 C 1.38815 * 119.99947 * 180.02562 * 10 9 7 13 13 N 1.31618 * 120.00084 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99835 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47043 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47178 * 119.99862 * 14 12 10 17 17 H 1.48505 * 109.47286 * 240.00281 * 14 12 10 18 18 H 1.09000 * 109.47342 * 297.74836 * 1 2 3 19 19 H 1.09003 * 109.47259 * 57.75736 * 1 2 3 20 20 H 1.09006 * 109.46692 * 177.75301 * 1 2 3 21 21 H 1.09006 * 110.33613 * 281.58701 * 5 4 2 22 22 H 1.09000 * 110.51087 * 159.18466 * 5 4 2 23 23 H 1.09002 * 110.51371 * 217.47805 * 6 5 4 24 24 H 1.08994 * 110.51108 * 94.90453 * 6 5 4 25 25 H 0.97002 * 120.00071 * 21.16743 * 9 7 2 26 26 H 0.96998 * 119.99891 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 8 2.0328 -0.7248 -1.1434 5 6 3.3890 -1.0912 -0.7990 6 6 3.3178 -1.5049 0.6877 7 6 2.0677 -0.7726 1.2248 8 1 2.3429 -0.0817 2.0217 9 7 1.0742 -1.7369 1.7037 10 6 1.1396 -2.2066 2.9883 11 1 1.9238 -1.8664 3.6484 12 6 0.1985 -3.1207 3.4419 13 7 -0.7564 -3.5364 2.6370 14 14 0.2880 -3.7619 5.1941 15 1 1.4462 -3.1442 5.8886 16 1 -0.9634 -3.4131 5.9134 17 1 0.4523 -5.2377 5.1734 18 1 -0.3634 0.4785 0.9095 19 1 -0.3634 0.5483 -0.8692 20 1 -0.3633 -1.0270 -0.0403 21 1 4.0554 -0.2376 -0.9239 22 1 3.7253 -1.9287 -1.4102 23 1 4.2109 -1.1758 1.2189 24 1 3.1966 -2.5842 0.7783 25 1 0.3701 -2.0428 1.1107 26 1 -1.4142 -4.1748 2.9540 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133470068.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:29 Heat of formation + Delta-G solvation = -56.558541 kcal Electronic energy + Delta-G solvation = -10272.023151 eV Core-core repulsion = 8350.151858 eV Total energy + Delta-G solvation = -1921.871293 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.42242 -36.19826 -33.52877 -32.29511 -30.58059 -26.76842 -25.31343 -22.80577 -21.03686 -19.49346 -17.09482 -16.94199 -16.31100 -16.04235 -15.43011 -14.97453 -13.90094 -13.46777 -13.19513 -13.13049 -12.88796 -12.69156 -12.24224 -12.02556 -11.94955 -11.54382 -11.43966 -11.03443 -10.58474 -9.01457 -7.94396 -5.23288 1.47188 1.47914 1.57927 2.55560 3.05054 3.37433 3.84360 4.01788 4.02877 4.24126 4.36403 4.50790 4.66095 4.74403 4.82583 5.01105 5.06871 5.14222 5.35504 5.42497 5.51389 6.05070 6.27938 7.33756 8.09801 8.33530 9.29430 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.071438 B = 0.013678 C = 0.012511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.856380 B = 2046.616224 C = 2237.498754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.067 3.933 3 H 0.095 0.905 4 O -0.399 6.399 5 C 0.050 3.950 6 C -0.175 4.175 7 C 0.134 3.866 8 H 0.066 0.934 9 N -0.730 5.730 10 C -0.240 4.240 11 H 0.077 0.923 12 C -0.078 4.078 13 N -0.970 5.970 14 Si 0.974 3.026 15 H -0.265 1.265 16 H -0.293 1.293 17 H -0.296 1.296 18 H 0.067 0.933 19 H 0.071 0.929 20 H 0.039 0.961 21 H 0.083 0.917 22 H 0.092 0.908 23 H 0.086 0.914 24 H 0.049 0.951 25 H 0.377 0.623 26 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.049 6.980 -3.855 10.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.009 3.991 3 H 0.113 0.887 4 O -0.319 6.319 5 C -0.027 4.027 6 C -0.215 4.215 7 C 0.025 3.975 8 H 0.084 0.916 9 N -0.372 5.372 10 C -0.372 4.372 11 H 0.095 0.905 12 C -0.270 4.270 13 N -0.621 5.621 14 Si 0.803 3.197 15 H -0.189 1.189 16 H -0.221 1.221 17 H -0.223 1.223 18 H 0.086 0.914 19 H 0.090 0.910 20 H 0.058 0.942 21 H 0.101 0.899 22 H 0.110 0.890 23 H 0.104 0.896 24 H 0.068 0.932 25 H 0.211 0.789 26 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.994 6.922 -3.868 10.573 hybrid contribution -0.345 -0.834 0.904 1.278 sum 6.648 6.087 -2.964 9.489 Atomic orbital electron populations 1.21574 0.93678 1.01607 1.02035 1.23304 0.95503 0.95574 0.84707 0.88706 1.89091 1.28804 1.75107 1.38923 1.23496 0.83912 1.00524 0.94727 1.23624 0.99919 1.01057 0.96923 1.21884 0.89259 0.91197 0.95169 0.91632 1.42783 1.32444 1.50335 1.11634 1.19698 1.09053 1.18590 0.89814 0.90484 1.25581 0.98089 1.01175 1.02132 1.69841 1.18445 1.37011 1.36835 0.85061 0.77368 0.77357 0.79884 1.18922 1.22052 1.22302 0.91413 0.90995 0.94214 0.89874 0.88957 0.89553 0.93231 0.78864 0.94076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.90 71.98 0.64 -4.13 15 2 C 0.07 2.33 3.89 31.10 0.12 2.45 15 3 H 0.10 2.68 8.14 -2.38 -0.02 2.66 15 4 O -0.40 -14.50 11.35 -148.98 -1.69 -16.19 15 5 C 0.05 1.48 7.65 72.48 0.55 2.04 15 6 C -0.17 -6.14 6.87 31.61 0.22 -5.92 15 7 C 0.13 5.38 3.61 46.01 0.17 5.55 15 8 H 0.07 2.52 8.11 -2.39 -0.02 2.50 15 9 N -0.73 -37.43 4.55 -318.14 -1.45 -38.88 15 10 C -0.24 -13.36 9.97 84.03 0.84 -12.52 15 11 H 0.08 4.09 7.83 -2.91 -0.02 4.07 15 12 C -0.08 -4.50 5.50 84.86 0.47 -4.03 15 13 N -0.97 -60.25 13.06 21.65 0.28 -59.96 15 14 Si 0.97 46.37 29.55 68.60 2.03 48.40 15 15 H -0.26 -11.76 7.11 99.48 0.71 -11.05 15 16 H -0.29 -13.94 7.11 99.48 0.71 -13.23 15 17 H -0.30 -14.15 7.11 99.48 0.71 -13.44 15 18 H 0.07 2.46 8.14 -2.39 -0.02 2.44 15 19 H 0.07 2.20 8.14 -2.39 -0.02 2.18 15 20 H 0.04 1.71 6.24 -2.38 -0.01 1.69 15 21 H 0.08 1.93 8.14 -2.38 -0.02 1.91 15 22 H 0.09 2.52 8.14 -2.39 -0.02 2.50 15 23 H 0.09 2.56 8.14 -2.39 -0.02 2.54 15 24 H 0.05 2.05 7.96 -2.39 -0.02 2.03 15 25 H 0.38 21.00 5.58 -92.71 -0.52 20.49 15 26 H 0.25 15.04 8.31 -92.71 -0.77 14.27 15 Total: -1.00 -64.47 219.10 2.82 -61.65 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.64 Total: 21.56 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 3.00 Total: -16.57 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -1.16 Total: -98.84 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -1.69 Total: -16.19 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -64.47 2.82 -61.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133470068.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.091 kcal (2) G-P(sol) polarization free energy of solvation -64.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds