Wall clock time and date at job start Mon Mar 30 2020 02:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99594 * 2 1 4 4 H 1.48501 * 109.46954 * 240.00043 * 3 2 1 5 5 H 1.48502 * 109.47368 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47004 * 119.99841 * 3 2 1 7 7 C 1.37870 * 120.00411 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00235 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99770 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47016 * 179.97438 * 9 7 2 11 11 C 1.42901 * 114.00523 * 180.02562 * 10 9 7 12 12 H 1.09007 * 110.86655 * 333.84905 * 11 10 9 13 13 C 1.55141 * 110.99741 * 210.00167 * 11 10 9 14 14 C 1.54311 * 103.01761 * 206.21526 * 13 11 10 15 15 N 1.47440 * 107.23978 * 22.28190 * 14 13 11 16 16 C 1.47846 * 108.56252 * 0.99041 * 15 14 13 17 17 H 0.96993 * 120.00308 * 0.02562 * 1 2 3 18 18 H 1.09002 * 109.47396 * 60.00356 * 9 7 2 19 19 H 1.08998 * 109.47343 * 299.99506 * 9 7 2 20 20 H 1.09003 * 110.70280 * 87.82828 * 13 11 10 21 21 H 1.09002 * 110.69976 * 324.59642 * 13 11 10 22 22 H 1.09007 * 109.88857 * 262.87562 * 14 13 11 23 23 H 1.09002 * 109.88684 * 141.69047 * 14 13 11 24 24 H 1.00901 * 111.00072 * 123.25293 * 15 14 13 25 25 H 1.08997 * 110.37447 * 94.73397 * 16 15 14 26 26 H 1.09004 * 110.37450 * 217.07700 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0005 11 6 1.5655 -4.8754 0.0000 12 1 0.5729 -4.8330 0.4485 13 6 2.4587 -5.9168 0.7242 14 6 2.0397 -7.2496 0.0691 15 7 1.4463 -6.9250 -1.2410 16 6 1.5022 -5.4601 -1.4331 17 1 -0.4850 0.8400 -0.0004 18 1 0.6249 -2.5571 -0.8897 19 1 0.6243 -2.5567 0.8903 20 1 2.2466 -5.9292 1.7933 21 1 3.5138 -5.7126 0.5418 22 1 1.3036 -7.7549 0.6945 23 1 2.9136 -7.8866 -0.0672 24 1 1.9285 -7.4059 -1.9855 25 1 2.3947 -5.1849 -1.9950 26 1 0.6065 -5.1103 -1.9465 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140094994.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:48 Heat of formation + Delta-G solvation = -76.178533 kcal Electronic energy + Delta-G solvation = -9865.998840 eV Core-core repulsion = 7943.276760 eV Total energy + Delta-G solvation = -1922.722080 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.91604 -37.36343 -34.87859 -30.88965 -29.83455 -28.56374 -24.64659 -22.26635 -21.93818 -18.71993 -18.14735 -17.20864 -16.56484 -15.74003 -15.50735 -14.93535 -14.30847 -14.14819 -13.55353 -13.07137 -13.06100 -12.66744 -12.53161 -12.40761 -12.14338 -11.57679 -11.33879 -10.88857 -10.25505 -9.47424 -8.34586 -6.48419 1.39159 1.44138 1.52708 2.32322 2.89365 2.98969 3.48997 3.70719 3.81524 4.06587 4.27466 4.54845 4.62615 4.75192 4.82160 4.88759 5.03108 5.13595 5.18588 5.51833 5.73273 5.92045 6.43718 6.49160 6.76782 7.23767 8.77562 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.111067 B = 0.009501 C = 0.009270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 252.039802 B = 2946.311385 C = 3019.828648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.986 3.014 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.554 4.554 8 H 0.063 0.937 9 C 0.210 3.790 10 O -0.398 6.398 11 C 0.059 3.941 12 H 0.056 0.944 13 C -0.137 4.137 14 C 0.053 3.947 15 N -0.684 5.684 16 C 0.032 3.968 17 H 0.272 0.728 18 H -0.013 1.013 19 H -0.015 1.015 20 H 0.084 0.916 21 H 0.073 0.927 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.353 0.647 25 H 0.049 0.951 26 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.100 -10.185 -0.551 10.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.808 3.192 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.592 4.592 8 H 0.081 0.919 9 C 0.136 3.864 10 O -0.317 6.317 11 C 0.000 4.000 12 H 0.074 0.926 13 C -0.175 4.175 14 C -0.075 4.075 15 N -0.315 5.315 16 C -0.097 4.097 17 H 0.081 0.919 18 H 0.005 0.995 19 H 0.003 0.997 20 H 0.103 0.897 21 H 0.092 0.908 22 H 0.104 0.896 23 H 0.100 0.900 24 H 0.170 0.830 25 H 0.067 0.933 26 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.465 -10.073 -0.328 10.657 hybrid contribution 0.637 1.001 -0.209 1.205 sum 4.103 -9.072 -0.537 9.971 Atomic orbital electron populations 1.70066 1.07836 1.28866 1.50126 1.25993 0.95974 1.03477 0.93684 0.85199 0.78078 0.76481 0.79440 1.18930 1.19889 1.18916 1.21369 0.94160 0.90813 1.52840 0.91901 1.19882 0.88540 0.84550 0.93474 1.87824 1.35260 1.13942 1.94670 1.23346 0.96581 0.84273 0.95775 0.92551 1.22874 0.99892 0.93923 1.00820 1.22613 0.99175 0.95405 0.90346 1.61772 1.58871 1.05598 1.05306 1.23092 1.00837 0.88740 0.97081 0.91917 0.99522 0.99687 0.89692 0.90799 0.89624 0.89989 0.83028 0.93271 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.22 15 2 C 0.01 0.44 5.46 84.65 0.46 0.90 15 3 Si 0.99 44.51 29.54 68.60 2.03 46.54 15 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 15 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 15 7 C -0.55 -33.56 9.43 25.60 0.24 -33.32 15 8 H 0.06 3.74 7.81 -2.91 -0.02 3.72 15 9 C 0.21 12.15 5.53 71.24 0.39 12.55 15 10 O -0.40 -20.09 10.14 -148.98 -1.51 -21.60 15 11 C 0.06 2.35 3.54 31.98 0.11 2.46 15 12 H 0.06 2.33 7.83 -2.38 -0.02 2.31 15 13 C -0.14 -4.12 6.68 31.77 0.21 -3.90 15 14 C 0.05 1.25 7.58 86.64 0.66 1.91 15 15 N -0.68 -18.34 7.39 -504.44 -3.73 -22.07 15 16 C 0.03 1.11 7.31 86.77 0.63 1.74 15 17 H 0.27 15.29 8.31 -92.71 -0.77 14.52 15 18 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 15 19 H -0.01 -0.88 8.12 -2.39 -0.02 -0.90 15 20 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 21 H 0.07 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.09 1.85 8.14 -2.38 -0.02 1.83 15 23 H 0.08 1.47 8.14 -2.39 -0.02 1.45 15 24 H 0.35 7.54 8.91 -89.69 -0.80 6.74 15 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 15 26 H 0.07 2.45 8.14 -2.39 -0.02 2.43 15 Total: -1.00 -66.24 225.17 0.14 -66.10 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 0.35 Total: 4.93 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 2.71 Total: -17.67 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -3.44 Total: -78.29 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -1.51 Total: -21.60 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -66.24 0.14 -66.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140094994.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.080 kcal (2) G-P(sol) polarization free energy of solvation -66.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds