Wall clock time and date at job start Mon Mar 30 2020 01:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 111.00580 * 2 1 4 4 H 1.08998 * 110.63716 * 323.31795 * 3 2 1 5 5 C 1.55148 * 110.87483 * 200.06775 * 3 2 1 6 6 C 1.55133 * 101.48378 * 205.89869 * 5 3 2 7 7 N 1.47426 * 104.72214 * 37.29794 * 6 5 3 8 8 C 1.36939 * 125.64656 * 155.82094 * 7 6 5 9 9 H 1.07999 * 119.99517 * 199.40367 * 8 7 6 10 10 C 1.38809 * 120.00347 * 19.40725 * 8 7 6 11 11 N 1.31623 * 119.99893 * 28.44314 * 10 8 7 12 12 Si 1.86793 * 119.99903 * 208.45078 * 10 8 7 13 13 H 1.48503 * 109.47100 * 179.97438 * 12 10 8 14 14 H 1.48503 * 109.47335 * 299.99887 * 12 10 8 15 15 H 1.48502 * 109.47227 * 59.99961 * 12 10 8 16 16 C 1.47022 * 108.69976 * 335.54833 * 7 6 5 17 17 H 1.08993 * 109.47341 * 179.97438 * 1 2 3 18 18 H 1.08996 * 109.46633 * 299.99787 * 1 2 3 19 19 H 1.08999 * 109.47269 * 59.99771 * 1 2 3 20 20 H 1.00896 * 111.00187 * 123.95943 * 2 1 3 21 21 H 1.09003 * 111.00636 * 324.13348 * 5 3 2 22 22 H 1.09000 * 111.00689 * 87.95310 * 5 3 2 23 23 H 1.09003 * 110.49732 * 278.44913 * 6 5 3 24 24 H 1.09002 * 110.34263 * 156.06155 * 6 5 3 25 25 H 0.96998 * 120.00170 * 5.66170 * 11 10 8 26 26 H 1.09002 * 109.87831 * 120.70897 * 16 7 6 27 27 H 1.09001 * 109.88102 * 241.86904 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 1 1.3696 2.0232 -0.6093 5 6 3.4649 1.3994 -0.4974 6 6 4.0008 2.6803 0.1945 7 7 3.3542 2.6889 1.5193 8 6 3.8323 3.3202 2.6366 9 1 3.4803 3.0270 3.6146 10 6 4.7691 4.3369 2.5121 11 7 4.7992 5.0741 1.4221 12 14 5.9870 4.6586 3.8913 13 1 6.8742 5.7884 3.5146 14 1 5.2490 5.0011 5.1336 15 1 6.8066 3.4419 4.1218 16 6 2.1079 1.9130 1.4407 17 1 -0.3633 -1.0276 -0.0005 18 1 -0.3632 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 1.8306 -0.5262 0.7813 21 1 4.0074 0.5149 -0.1635 22 1 3.5084 1.4955 -1.5823 23 1 3.7171 3.5672 -0.3720 24 1 5.0843 2.6280 0.3015 25 1 4.1167 4.9624 0.7419 26 1 2.1425 1.0835 2.1469 27 1 1.2562 2.5562 1.6625 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150195421.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:25 Heat of formation + Delta-G solvation = 20.433525 kcal Electronic energy + Delta-G solvation = -10106.857864 eV Core-core repulsion = 8286.043860 eV Total energy + Delta-G solvation = -1820.814004 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.05629 -34.66235 -31.96507 -29.09652 -27.27681 -24.76285 -23.43672 -20.18861 -20.10841 -17.46519 -15.57823 -15.14532 -14.02107 -13.72759 -13.35795 -13.10223 -13.05875 -12.13635 -11.69620 -11.48509 -10.81545 -10.69522 -10.53210 -10.45915 -10.00375 -9.97945 -9.50763 -8.44713 -8.10627 -6.89784 -6.08635 -3.14283 3.50909 3.55486 3.73311 4.46813 4.63970 5.25797 5.36344 5.39889 5.49191 5.68454 5.71228 5.81618 5.96623 6.16042 6.30166 6.50356 6.54641 6.59493 6.99844 7.10874 7.34823 7.58727 7.84503 8.51485 9.04655 9.83689 10.41000 11.23403 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.093614 B = 0.012370 C = 0.011694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 299.029532 B = 2263.004150 C = 2393.716704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.686 5.686 3 C 0.072 3.928 4 H 0.079 0.921 5 C -0.122 4.122 6 C 0.142 3.858 7 N -0.600 5.600 8 C -0.341 4.341 9 H 0.062 0.938 10 C -0.025 4.025 11 N -0.914 5.914 12 Si 1.066 2.934 13 H -0.285 1.285 14 H -0.293 1.293 15 H -0.293 1.293 16 C 0.111 3.889 17 H 0.062 0.938 18 H 0.021 0.979 19 H 0.061 0.939 20 H 0.341 0.659 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.026 0.974 24 H 0.050 0.950 25 H 0.268 0.732 26 H 0.021 0.979 27 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 -7.450 -2.294 9.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.315 5.315 3 C -0.038 4.038 4 H 0.098 0.902 5 C -0.161 4.161 6 C 0.016 3.984 7 N -0.328 5.328 8 C -0.469 4.469 9 H 0.079 0.921 10 C -0.227 4.227 11 N -0.554 5.554 12 Si 0.895 3.105 13 H -0.210 1.210 14 H -0.220 1.220 15 H -0.221 1.221 16 C -0.017 4.017 17 H 0.081 0.919 18 H 0.040 0.960 19 H 0.080 0.920 20 H 0.159 0.841 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.039 0.961 27 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -3.532 -6.565 -2.443 7.845 hybrid contribution -1.704 -0.594 0.574 1.893 sum -5.236 -7.159 -1.869 9.064 Atomic orbital electron populations 1.22176 0.88568 1.01164 1.00321 1.60617 1.07211 1.14009 1.49710 1.22655 0.96565 0.88288 0.96339 0.90243 1.22825 0.94639 0.99401 0.99196 1.21620 0.97048 0.93390 0.86362 1.44495 1.19756 1.60520 1.07990 1.19727 1.26021 1.16152 0.84953 0.92059 1.25803 1.01623 0.92192 1.03061 1.70779 1.38146 1.35342 1.11158 0.83516 0.76530 0.75950 0.74474 1.21027 1.22014 1.22067 1.22019 0.90383 0.94927 0.94345 0.91930 0.95998 0.92023 0.84092 0.91470 0.91763 0.95609 0.93155 0.92052 0.96095 0.96437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.55 60.06 0.63 0.99 15 2 N -0.69 -10.64 6.72 -112.07 -0.75 -11.39 15 3 C 0.07 1.32 3.23 -65.88 -0.21 1.11 15 4 H 0.08 1.45 7.89 -51.93 -0.41 1.04 15 5 C -0.12 -2.34 6.79 -24.47 -0.17 -2.51 15 6 C 0.14 3.44 5.39 -2.41 -0.01 3.42 15 7 N -0.60 -16.00 3.26 -169.93 -0.55 -16.55 15 8 C -0.34 -10.03 10.00 -15.06 -0.15 -10.18 15 9 H 0.06 1.80 7.97 -52.49 -0.42 1.38 15 10 C -0.02 -0.73 5.10 -17.43 -0.09 -0.82 15 11 N -0.91 -28.32 13.01 55.49 0.72 -27.60 15 12 Si 1.07 25.89 30.00 -169.99 -5.10 20.79 15 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 16 C 0.11 2.45 6.89 -3.07 -0.02 2.43 15 17 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 18 H 0.02 0.29 8.13 -51.93 -0.42 -0.13 15 19 H 0.06 0.77 8.08 -51.93 -0.42 0.35 15 20 H 0.34 5.13 8.24 -39.29 -0.32 4.81 15 21 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 22 H 0.06 1.11 8.14 -51.93 -0.42 0.68 15 23 H 0.03 0.66 6.81 -51.93 -0.35 0.31 15 24 H 0.05 1.31 8.08 -51.93 -0.42 0.89 15 25 H 0.27 8.36 6.19 -40.82 -0.25 8.11 15 26 H 0.02 0.46 7.57 -51.93 -0.39 0.07 15 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 15 LS Contribution 223.78 15.07 3.37 3.37 Total: -1.00 -31.52 223.78 -6.23 -37.75 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -3.90 Total: -0.83 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -0.02 Total: -5.55 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.58 Total: -55.54 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -5.10 Total: 20.79 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -31.52 -6.23 -37.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150195421.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.188 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds