Wall clock time and date at job start Mon Mar 30 2020 01:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 111.00580 * 2 1 4 4 H 1.08998 * 110.63716 * 323.31795 * 3 2 1 5 5 C 1.55148 * 110.87483 * 200.06775 * 3 2 1 6 6 C 1.55133 * 101.48378 * 205.89869 * 5 3 2 7 7 N 1.47426 * 104.72214 * 37.29794 * 6 5 3 8 8 C 1.36939 * 125.64656 * 155.82094 * 7 6 5 9 9 H 1.07999 * 119.99517 * 199.40367 * 8 7 6 10 10 C 1.38809 * 120.00347 * 19.40725 * 8 7 6 11 11 N 1.31623 * 119.99893 * 28.44314 * 10 8 7 12 12 Si 1.86793 * 119.99903 * 208.45078 * 10 8 7 13 13 H 1.48503 * 109.47100 * 179.97438 * 12 10 8 14 14 H 1.48503 * 109.47335 * 299.99887 * 12 10 8 15 15 H 1.48502 * 109.47227 * 59.99961 * 12 10 8 16 16 C 1.47022 * 108.69976 * 335.54833 * 7 6 5 17 17 H 1.08993 * 109.47341 * 179.97438 * 1 2 3 18 18 H 1.08996 * 109.46633 * 299.99787 * 1 2 3 19 19 H 1.08999 * 109.47269 * 59.99771 * 1 2 3 20 20 H 1.00896 * 111.00187 * 123.95943 * 2 1 3 21 21 H 1.09003 * 111.00636 * 324.13348 * 5 3 2 22 22 H 1.09000 * 111.00689 * 87.95310 * 5 3 2 23 23 H 1.09003 * 110.49732 * 278.44913 * 6 5 3 24 24 H 1.09002 * 110.34263 * 156.06155 * 6 5 3 25 25 H 0.96998 * 120.00170 * 5.66170 * 11 10 8 26 26 H 1.09002 * 109.87831 * 120.70897 * 16 7 6 27 27 H 1.09001 * 109.88102 * 241.86904 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 1 1.3696 2.0232 -0.6093 5 6 3.4649 1.3994 -0.4974 6 6 4.0008 2.6803 0.1945 7 7 3.3542 2.6889 1.5193 8 6 3.8323 3.3202 2.6366 9 1 3.4803 3.0270 3.6146 10 6 4.7691 4.3369 2.5121 11 7 4.7992 5.0741 1.4221 12 14 5.9870 4.6586 3.8913 13 1 6.8742 5.7884 3.5146 14 1 5.2490 5.0011 5.1336 15 1 6.8066 3.4419 4.1218 16 6 2.1079 1.9130 1.4407 17 1 -0.3633 -1.0276 -0.0005 18 1 -0.3632 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 1.8306 -0.5262 0.7813 21 1 4.0074 0.5149 -0.1635 22 1 3.5084 1.4955 -1.5823 23 1 3.7171 3.5672 -0.3720 24 1 5.0843 2.6280 0.3015 25 1 4.1167 4.9624 0.7419 26 1 2.1425 1.0835 2.1469 27 1 1.2562 2.5562 1.6625 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150195421.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:25 Heat of formation + Delta-G solvation = -2.537031 kcal Electronic energy + Delta-G solvation = -10107.853942 eV Core-core repulsion = 8286.043860 eV Total energy + Delta-G solvation = -1821.810083 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.75104 -36.31960 -33.88923 -30.99841 -28.94011 -26.58835 -24.97029 -22.13427 -21.68929 -19.59837 -17.08286 -16.81365 -15.90250 -15.49925 -15.10640 -14.84507 -14.39108 -13.86549 -13.27917 -12.86846 -12.64165 -12.55129 -12.38135 -12.04878 -11.89869 -11.65830 -11.61096 -10.58346 -9.47283 -9.06397 -8.38461 -5.42393 1.55396 1.63984 1.83568 2.60820 3.13012 3.14573 3.61839 3.82173 3.87558 4.15820 4.41343 4.47974 4.59733 4.64914 4.80396 4.93282 5.00007 5.01225 5.06335 5.28575 5.61627 5.99570 6.25965 6.36638 6.84939 7.64339 8.23938 8.91805 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.093614 B = 0.012370 C = 0.011694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 299.029532 B = 2263.004150 C = 2393.716704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.680 5.680 3 C 0.089 3.911 4 H 0.085 0.915 5 C -0.105 4.105 6 C 0.143 3.857 7 N -0.624 5.624 8 C -0.358 4.358 9 H 0.056 0.944 10 C -0.076 4.076 11 N -0.939 5.939 12 Si 1.120 2.880 13 H -0.288 1.288 14 H -0.273 1.273 15 H -0.279 1.279 16 C 0.108 3.892 17 H 0.088 0.912 18 H 0.017 0.983 19 H 0.068 0.932 20 H 0.345 0.655 21 H 0.073 0.927 22 H 0.091 0.909 23 H 0.007 0.993 24 H 0.021 0.979 25 H 0.254 0.746 26 H 0.027 0.973 27 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.319 -8.787 -2.270 10.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.309 5.309 3 C -0.022 4.022 4 H 0.103 0.897 5 C -0.144 4.144 6 C 0.017 3.983 7 N -0.352 5.352 8 C -0.487 4.487 9 H 0.073 0.927 10 C -0.272 4.272 11 N -0.581 5.581 12 Si 0.943 3.057 13 H -0.214 1.214 14 H -0.199 1.199 15 H -0.205 1.205 16 C -0.019 4.019 17 H 0.107 0.893 18 H 0.035 0.965 19 H 0.086 0.914 20 H 0.164 0.836 21 H 0.092 0.908 22 H 0.109 0.891 23 H 0.025 0.975 24 H 0.040 0.960 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -3.979 -7.940 -2.425 9.206 hybrid contribution -1.656 -0.219 0.563 1.762 sum -5.634 -8.158 -1.862 10.088 Atomic orbital electron populations 1.22294 0.86683 1.02960 1.00423 1.60615 1.08900 1.11620 1.49806 1.22452 0.96292 0.89948 0.93500 0.89698 1.22706 0.94839 0.96636 1.00225 1.21566 0.95431 0.95379 0.85896 1.44793 1.21797 1.60486 1.08083 1.20021 1.26470 1.16266 0.85898 0.92652 1.27319 1.03193 0.92005 1.04688 1.70904 1.38322 1.36903 1.11968 0.82814 0.74450 0.76126 0.72329 1.21381 1.19887 1.20522 1.22218 0.88122 0.94262 0.97345 0.89334 0.96468 0.91361 0.83601 0.90798 0.89096 0.97521 0.96017 0.93585 0.95500 0.97624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.55 127.69 1.35 1.93 15 2 N -0.68 -19.01 6.72 -508.48 -3.42 -22.42 15 3 C 0.09 3.11 3.23 46.10 0.15 3.25 15 4 H 0.08 2.90 7.89 -2.39 -0.02 2.88 15 5 C -0.11 -3.87 6.79 32.06 0.22 -3.65 15 6 C 0.14 7.02 5.39 86.93 0.47 7.49 15 7 N -0.62 -33.60 3.26 -691.54 -2.26 -35.85 15 8 C -0.36 -21.34 10.00 84.03 0.84 -20.50 15 9 H 0.06 3.28 7.97 -2.91 -0.02 3.26 15 10 C -0.08 -4.50 5.10 84.86 0.43 -4.06 15 11 N -0.94 -59.43 13.01 21.65 0.28 -59.15 15 12 Si 1.12 52.26 30.00 68.60 2.06 54.32 15 13 H -0.29 -13.51 7.11 99.48 0.71 -12.80 15 14 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 15 H -0.28 -12.28 7.11 99.48 0.71 -11.58 15 16 C 0.11 4.70 6.89 86.73 0.60 5.29 15 17 H 0.09 1.58 8.14 -2.39 -0.02 1.56 15 18 H 0.02 0.40 8.13 -2.39 -0.02 0.39 15 19 H 0.07 1.48 8.08 -2.39 -0.02 1.46 15 20 H 0.35 9.37 8.24 -89.70 -0.74 8.63 15 21 H 0.07 2.63 8.14 -2.39 -0.02 2.61 15 22 H 0.09 2.89 8.14 -2.39 -0.02 2.87 15 23 H 0.01 0.37 6.81 -2.39 -0.02 0.35 15 24 H 0.02 1.16 8.08 -2.39 -0.02 1.14 15 25 H 0.25 16.37 6.19 -92.71 -0.57 15.80 15 26 H 0.03 1.15 7.57 -2.39 -0.02 1.13 15 27 H 0.01 0.26 8.14 -2.39 -0.02 0.24 15 Total: -1.00 -67.82 223.78 1.32 -66.50 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.60 Total: 6.85 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 4.05 Total: -10.25 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -5.39 Total: -117.42 kcal Atomic # 14 Polarization: 52.26 SS G_CDS: 2.06 Total: 54.32 kcal Total: -67.82 1.32 -66.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150195421.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.962 kcal (2) G-P(sol) polarization free energy of solvation -67.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds